Browsing by Subject "Arthropoda"

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  • Abrego, Nerea; Roslin, Tomas; Huotari, Tea; Ji, Yinqiu; Schmidt, Niels Martin; Wang, Jiaxin; Yu, Douglas W.; Ovaskainen, Otso (2021)
    Species interactions are known to structure ecological communities. Still, the influence of climate change on biodiversity has primarily been evaluated by correlating individual species distributions with local climatic descriptors, then extrapolating into future climate scenarios. We ask whether predictions on arctic arthropod response to climate change can be improved by accounting for species interactions. For this, we use a 14-year-long, weekly time series from Greenland, resolved to the species level by mitogenome mapping. During the study period, temperature increased by 2 degrees C and arthropod species richness halved. We show that with abiotic variables alone, we are essentially unable to predict species responses, but with species interactions included, the predictive power of the models improves considerably. Cascading trophic effects thereby emerge as important in structuring biodiversity response to climate change. Given the need to scale up from species-level to community-level projections of biodiversity change, these results represent a major step forward for predictive ecology.
  • Riesgo, Ana; Andrade, Sonia C. S.; Sharma, Prashant P.; Novo, Marta; Perez-Porro, Alicia R.; Vahtera, Varpu; Gonzalez, Vanessa L.; Kawauchi, Gisele Y.; Giribet, Gonzalo (2012)
    Traditionally, genomic or transcriptomic data have been restricted to a few model or emerging model organisms, and to a handful of species of medical and/or environmental importance. Next-generation sequencing techniques have the capability of yielding massive amounts of gene sequence data for virtually any species at a modest cost. Here we provide a comparative analysis of de novo assembled transcriptomic data for ten non-model species of previously understudied animal taxa.
  • Seppälä, Sini (Helsingin yliopisto, 2019)
    Not much attention is paid on the conservation of invertebrates despite their importance to the ecosystems in general and their benefits and ecosystem services to us, humans. This study is part of a project aiming to start the Sampled Red List Index (SRLI) for spiders. The IUCN Red List Index (RLI) is used for measuring the overall extinction risk of groups of species and the sampled approach is a way to evaluate the trajectory towards extinction of megadiverse groups without the need to assess every species of the whole group of interest. A random sample of 200 spider species were selected from the global checklist and assessed according to IUCN Red List Categories and Criteria. Given the availability of data, I was able to calculate the extent of occurrence and area of occupancy for 80 species, of which 70 species had an EOO above 20000 km² and 75 species an AOO above 2000 km², the thresholds below which species can be considered threatened. The trends in EOO and AOO were assumed to be stable for most species (49 species) given the inexistence of monitoring data for any taxon. Evidence of decline was found for only 10 species, usually inferred from habitat loss. Habitat data was collected for 118 species. The most common habitat type was forest (73 species), followed by grasslands (24 species) and artificial habitats (22 species). For 44 species the habitat trend was inferred to be stable, only declining, according to available knowledge, for 14 species and increasing for one species. For the remaining 141 species the habitat trend could not be inferred and was thus assumed to be unknown. The most commonly mentioned threat types were agriculture (11 species), fires (7 species) and logging (6 species). For 39 species there were no known threats and for the rest of the 132 species the threats were unknown. Conservation actions in place were observed for 104 species, most commonly site and area protection (100 species) and resource and habitat protection (88 species). Conservation actions such as education and awareness (8 species), resource and habitat protection (7 species) and site and area management (6 species) were to take into consideration. All the 200 species were estimated to be in need of further basic research especially on threats (143 species and distribution (140 species), but also on life history and ecology (135 species). Due to several knowledge shortfalls, including the Wallacean (distribution of species), Prestonian (population trends) and Hutchinsonian (response to environmental change), no threat category could be reached for the vast majority of the species. The results show that an IUCN category could be reached for only 59 species, of which 55 were assessed as Least Concern and a threatened category was reached for only 4 species (t as Critically Endangered and one as Vulnerable). The baseline SRLI at this first point in time was 0.95 (in a 0-1 scale, where 0 means all species are extinct and 1 for all species are Least Concern). We hypothesize however that among the 141 Data Deficient species there should be a higher proportion of threatened species than among the 59 evaluated. This would be due to two reasons. First, the scarcity of information on many species might in part be due to their rarity. Second, widespread species were often the only for which an assessment could be reached, creating a bias in the dataset towards a large base SRLI value. The strategy currently imposed by IUCN is therefore clearly inadequate for taxa with scarce information, which represent the vast majority of species. I propose the future use of a different, non-random, approach to the selection of species in the SRLI and its adoption for other taxa which represent in fact most extant and threatened species.
  • Cardoso, Pedro; Shirey, Vaughn; Seppälä, Sini; Henriques, Sergio; Draney, Michael L.; Foord, Stefan; Gibbons, Alastair T.; Gomez, Luz A.; Kariko, Sarah; Malumbres-Olarte, Jagoba; Milne, Marc; Vink, Cor J. (2019)
    Background Data on 200 species of spiders were collected to assess the global threat status of the group worldwide. To supplement existing digital occurrence records from GBIF, a dataset of new occurrence records was compiled for all species using published literature or online sources, from which geographic coordinates were extracted or interpreted from locality description data. New information A total of 5,104 occurrence records were obtained, of which 2,378 were from literature or online sources other than GBIF. Of these, 2,308 had coordinate data. Reporting years ranged from 1834 to 2017. Most records were from North America and Europe, with Brazil, China, India and Australia also well represented.
  • Seppälä, Sini; Henriques, Sergio; Draney, Michael L.; Foord, Stefan; Gibbons, Alastair T.; Gomez, Luz A.; Kariko, Sarah; Malumbres-Olarte, Jagoba; Milne, Marc; Vink, Cor J.; Cardoso, Pedro (2018)
    Background The IUCN Red List of Threatened Species is the most widely used information source on the extinction risk of species. One of the uses of the Red List is to evaluate and monitor the state of biodiversity and a possible approach for this purpose is the Red List Index (RLI). For many taxa, mainly hyperdiverse groups, it is not possible within available resources to assess all known species. In such cases, a random sample of species might be selected for assessment and the results derived from it extrapolated for the entire group - the Sampled Red List Index (SRLI). The current contribution is the second in four papers that will constitute the baseline of a future spider SRLI encompassing 200 species distributed across the world. New information A sample of 200 species of spiders were randomly selected from the World Spider Catalogue, an updated global database containing all recognised species names for the group. The 200 selected species where divided taxonomically at the family level and the familes were ordered alphabetically. In this publication, we present the conservation profiles of 45 species belonging to the families alphabetically arranged between Gnaphosidae and Nemesiidae, which encompassed Gnaphosidae, ldiopidae, Linyphiidae, Liocranidae, Lycosidae, Micropholcommatidae, Mysmenidae and Nemesiidae.
  • Seppälä, Sini; Henriques, Sergio; Draney, Michael L.; Foord, Stefan; Gibbons, Alastair T.; Gomez, Luz A.; Kariko, Sarah; Malumbres-Olarte, Jagoba; Milne, Marc; Vink, Cor J.; Cardoso, Pedro (2018)
    Background The IUCN Red List of Threatened Species is the most widely used information source on the extinction risk of species. One of the uses of the Red List is to evaluate and monitor the state of biodiversity and a possible approach for this purpose is the Red List Index (RLI). For many taxa, mainly hyperdiverse groups, it is not possible within available resources to assess all known species. In such cases, a random sample of species might be selected for assessment and the results derived from it extrapolated for the entire group-the Sampled Red List Index (SRLI). The current contribution is the third in four papers that will constitute the baseline of a future spider SRLI encompassing 200 species distributed across the world. New information A sample of 200 species of spiders were randomly selected from the World Spider Catalogue, an updated global database containing all recognized species names for the group. The 200 selected species where divided taxonomically at the family level, and the familes were ordered alphabetically. In this publication, we present the conservation profiles of 58 species belonging to the famillies alphabetically arranged between Oecobiidae and Salticidae, which encompassed Oecobiidae, Oonopidae, Orsolobidae, Oxyopidae, Palpimanidae, Philodromidae, Pholcidae, Pisauridae, Prodidomidae and Salticidae.
  • Seppälä, Sini; Henriques, S.S.; Draney, Michael L.; Foord, Stefan; Gibbons, Alastair T; Gomez, Luz A; Kariko, Sarah; Malumbres-Olarte, Jagoba; Milne, Marc; Vink, Cor J; Cardoso, Pedro (2018)
    Background The IUCN Red List of Threatened Species is the most widely used information source on the extinction risk of species. One of the uses of the Red List is to evaluate and monitor the state of biodiversity and a possible approach for this purpose is the Red List Index (RLI). For many taxa, mainly hyperdiverse groups, it is not possible within available resources to assess all known species. In such cases, a random sample of species might be selected for assessment and the results derived from it extrapolated for the entire group - the Sampled Red List Index (SRLI). The current contribution is the final in four papers that will constitute the baseline of a future spider SRLI encompassing 200 species distributed across the world. New information A sample of 200 species of spiders were randomly selected from the World Spider Catalogue, an updated global database containing all recognised species names for the group. The selected species were classified taxonomically at the family level and the familes were ordered alphabetically. In this publication, we present the conservation profiles of 50 species belonging to the families alphabetically arranged between Scytodidae and Zoropsidae, which encompassed Scytodidae, Selenopidae, Sicariidae, Sparassidae, Tetrablemmidae, Tetragnathidae, Theraphosidae, Theridiidae, Theridiosomatidae, Thomisidae, Trochanteriidae, Zodariidae and Zoropsidae.
  • Vieira Borges, Paulo Alexandre; Lamelas-Lopez, Lucas; Amorim, Isabel R.; Danielczak, Anja; Boieiro, Mario; Rego, Carla; Wallon, Sophie; Nunes, Rui; Cardoso, Pedro; Hochkirch, Axel (2019)
    Background Azorean volcanic cave biodiversity is under considerable pressure due to ongoing threats of pollution, land use change, touristic activities or climate change. In this contribution, we present the IUCN Red List profiles of 15 cave-adapted arthropod species, endemic to the Azorean archipelago, including species belonging to the speciose genus Trechus (Carabidae), which is represented in Azores by seven species. The objective of this paper is to assess all endemic Azorean cave-adapted species and advise on possible future research and conservation actions critical for the long-term survival of the most endangered species. New information Most species have a restricted distribution (i.e. occur in one or two caves), very small extent of occurrence (EOO) and a small area of occupancy (AOO). A continuing decline in the number of mature individuals is inferred from the ongoing cave habitat degradation. The two troglobitic species of the homopteran genus Cixius are in great danger of extinction due to major land-use changes in epigean habitats above their known localities. We suggest, as future measures of conservation, the regular monitoring of the species (every five years), the creation of additional protected caves, the limitation of several aggressive activities around the caves (e.g. decreasing pasture intensification) and in some cases the creation of fences in the entrance of the most important caves.
  • Branco, Vasco Veiga; Henriques, Sergio; Rego, Carla; Cardoso, Pedro (2019)
    Background The Iberian Peninsula is a diverse region that contains several different bioclimatic areas within one confined space, leading to high biodiversity. Portugal distinguishes itself in this regard by having a high count of spider species (829) and a remarkable number of endemic spider species (42) for its size (approximately 88,890 km2). However, only one non-endemic species (Macrothele calpeiana) is currently protected by the Natura 2000 network and no endemic spider species (aside from Anapistula ataecina) has been assessed according to the IUCN Red List criteria. The objective of this paper is to assess all non-assessed endemic species (41) as well as M. calpeiana. New information The 43 assessed species belong to 15 families, the richest being Zodariidae, Dysderidae, Linyphiidae and Gnaphosidae. In general and despite the lack of information on more than half the species, general patterns and trends could be found. Only 18 species (including M. calpeiana and A. ataecina) had enough data to allow their EOO (extent of occurrence) and AOO (area of occurrence) to be quantified. Of these, we modelled the distribution of 14 epigean species, eight of which were found to be widespread. The remaining six fulfilled at least one of the criteria for threatened species. Four species are troglobiont, all of which meet the EOO and AOO thresholds for threatened species. The remaining 25 Portuguese endemics had no reliable information on their range. Only nine species out of the 43 are estimated to be in decline and 11 are stable, with the majority of species having no information on trends (23 species). Forest areas, sand dunes, shrublands and caves host the majority of species. As such, the threats to Portuguese endemics reflect the diversity of habitats they occupy. Urbanisation and climate change seem to be the most important threats to these species, although other factors are also important and represented across the data. A considerable proportion of the currently known Portuguese endemic species can be found in national protected areas, with higher prominence to the Serras de Aire e Candeeiros, Douro Internacional, Vale do Guadiana, Sudoeste Alentejano e Costa Vicentina and Arrabida Natural Parks. These correspond mostly to areas that have been particularly well sampled during the last two decades.
  • Fukushima, Caroline Sayuri; Mendoza, Jorge Ivan; West, Rick C.; Longhorn, Stuart; Rivera, Emmanuel; Cooper, Ernst W. T.; Henaut, Yann; Henriques, Sergio; Cardoso, Pedro (2019)
    Background CITES is an international agreement between governments to ensure that international trade in specimens of wild animals and plants does not threaten their survival. Regarding spiders, all species listed in CITES are tarantulas. They are included in Appendix II, meaning that they are species that are not necessarily now threatened with extinction but that they may become so unless trade is closely controlled. Many tarantulas are legally and illegally traded in the pet market and they are one of the most traded invertebrate groups. Originally, the CITES list published in 1995 included all the current species of the genus Brachypelma Simon, 1891 plus Aphonopelma pallidum (F. O. Pickard-Cambridge, 1897) and the so-called Aphonopelma albiceps (Pocock, 1903). After that, some taxonomic changes were done, as well as descriptions of new species in the genus Brachypelma. The objective of this paper is to assess the 21 taxonomically valid spider species listed on CITES according to the IUCN criteria, study the general patterns and trends and advise on possible future conservation actions critical for the survival of endangered species. New information Amongst all 21 species assessed, 16 had sufficient data on their distribution, ecology and threats to properly understand their current status and suggest possible conservation measures. A decline in the area of occupancy (AOO) and extent of occurrence (EOO) was inferred to almost all species, caused mostly by human activities (urbanisation, roads, agricultural and touristic activities), which often lead to the complete loss of subpopulations across their range. Hurricanes and frequent rising water, which are increasing in frequency due to climate change, can cause decline in habitat quality and consequent change in EOO and AOO of some species and should also be considered when planning conservation actions. Severe fragmentation was detected in 13 species and is therefore one of the most relevant threats to the most endangered Brachypelma species and should be made a priority aspect to deal with when proposing conservation actions for the group. Regarding the loss of individuals in wild populations, the main cause seems to be the overharvesting to meet the illegal trade. The most important conservation actions identified across species include preserving their natural habitat through protected areas, establishing management plans for both the species and their habitats and undertaking systematic monitoring to provide information about population recovery and species re-introduction programmes. In general, we propose to prioritise and support research on the population trends and distribution, as well as on the impact of land use and habitat degradation. Special attention regarding conservation actions and research plans has to be given to the central Pacific coastal area of Mexico, particularly around Guerrero State where five species of Brachypelma occur. Critically, for some of the most endangered species, such as B. baumgarteni and B. hamorii, there is no official protected area in their range of occurrence. It would therefore be highly recommended to establish at least one conservation unit which focuses on protecting each of these species in situ. In some cases, basic taxonomic research is needed before development of any appropriate conservation action can be proposed.
  • Malumbres-Olarte, Jagoba; Cardoso, Pedro; Fonseca Crespo, Luis Carlos; Gabriel, Rosalina; Pereira, Fernando; Carvalho, Rui; Rego, Carla; Nunes, Rui; Ferreira, Maria Teresa; Amorim, Isabel R.; Rigal, Francois; Borges, Paulo A. V. (2019)
    Background The data presented here come from samples collected as part of two recent research projects (NETBIOME - ISLANDBIODIV and FCT - MACDIV) which aimed at understanding the drivers of community assembly in Macaronesian islands. We applied the sampling protocol COBRA (Conservation Oriented Biodiversity Rapid Assessment, Cardoso 2009) in sixteen 50 m x 50 m native forest plots in the Azorean Islands of Pico (6 plots) and Terceira (10 plots) to assess spider diversity. Through this publication, we contribute to the knowledge of the arachnofauna of the Azores and, more specifically, to that of the islands of Pico and Terceira. New information The collected samples yielded 8,789 specimens, of which 45% were adults (3,970) belonging to 13 families, 36 species and three morphospecies that have yet to be described. Species of the family Linyphiidae dominated the samples, with 17 species and two morphospecies that have yet to be described (48% of the taxa). Out of the identified (morpho) species, 16 were introduced, 13 Azorean endemic (three of which were undescribed) and seven native (five of them Macaronesian endemics). We report the first record of the introduced species Haplodrassus signifer and Agyneta decora in Pico Island.
  • Malumbres-Olarte, Jagoba; Boieiro, Mario; Cardoso, Pedro; Carvalho, Rui; Fonseca Crespo, Luis Carlos; Gabriel, Rosalina; Macias Hernandez, Nuria; Paulo, Octavio S.; Pereira, Fernando; Rego, Carla; Ros-Prieto, Alejandra; Silva, Isamberto; Vieira, Ana; Rigal, Francois; Borges, Paulo A. V. (2020)
    Background Here we present the data obtained from the samples collected as part of a large research project (MACDIV) which aims at understanding the drivers of spider (Araneae) community assembly in Macaronesian islands. To obtain the data, we applied the sampling protocol COBRA (Conservation Oriented Biodiversity Rapid Assessment), in twelve 50 m x 50 m native forest plots and five dry habitat plots on the island of Madeiraand in 5 dry habitat plots on the island of Porto Santo. Through this publication, we contribute to the knowledge of the arachnofauna of the Madeiran archipelago. New information From the samples that we collected, we obtained a total of 14,902 specimens, of which 49% were adults (7,263). We identified these specimens to 87 species and 18 morphospecies (undescribed), belonging to 26 families. Species of the family Linyphiidae dominated the samples, with 24 (morpho)species. Out of the 105 recorded (morpho)species, 34 were endemic, 26 native non-endemic, 22 introduced and 23 species of unknown origin. We report seven new records of possibly recently introduced species in the Madeiran archipelago. We also present 21 new records for Madeira island and 32 for Porto Santo (33 for the whole archipelago).
  • Carvalho, Rui; Cardoso, Pedro; Gil, Artur; Ferreira, Maria Teresa; Ramos, Candida; Lamelas-Lopez, Lucas; Pereira, Fernando; Malumbres-Olarte, Jagoba; Ros-Prieto, Alejandra; Boieiro, Mario; Borges, Paulo A. V. (2021)
    Background The sharp increase in tourist visitation of the Azores Archipelago from 2015 onwards raised concerns about the impacts of recreational tourism on native habitats. In response, a project was financed by the Azorean Government to investigate the drivers of biodiversity erosion associated with recreational tourism. Here, we present the data on spider biodiversity found on trails located within the native Azorean forests as they are home to several endemic species of great conservation value. We applied an optimised and standardised sampling protocol (COBRA) in twenty-three plots located in five trails on Terceira and Sao Miguel Islands and assessed diversity and abundance of spider species at different distances from the trail head and the trail itself. New information Of the 45 species (12435 specimens) collected, 13 were endemic to the Azores (9690 specimens), 10 native non-endemic (2047 specimens) and 22 introduced (698 specimens). This database will be the baseline of a long-term monitoring project for the assessment of touristic impacts on native forest trails. This methodology can also be used on other habitats and biogeograhical regions.
  • Kiljunen, Niina; Pajunen, Timo; Fukushima, Caroline; Soukainen, Arttu; Kuurne, Jaakko; Korhonen, Tuuli; Saarinen, Joni; Falck, Ilari; Laine, Erkka; Mammola, Stefano; Urbano, Fernando; Macias-Hernandez, Nuria; Cardoso, Pedro (2020)
    Background A spider taxonomy and ecology field course was organised in Kilpisjarvi Biological Station, northern Finland, in July 2019. During the course, four 50 x 50 m plots in mountain birch forest habitat were sampled following a standardised protocol. In addition to teaching and learning about spider identification, behaviour, ecology and sampling, the main aim of the course was to collect comparable data from the Kilpisjarvi area as part of a global project, with the purpose of uncovering global spider diversity patterns. New information A total of 2613 spiders were collected, of which 892 (34%) were adults. Due to uncertainty of juvenile identification, only adults are included in the data presented in this paper. The observed adult spiders belong to 51 species, 40 genera and 11 families, of which the Linyphiidae were the most rich and abundant with 28 (55%) species and 461 (52%) individuals. Lycosidae had six species and 286 individuals, Gnaphosidae five species and 19 individuals, Thomisidae four species and 24 individuals, Theridiidae two species and 23 individuals. All other six families had one species and less than 40 individuals. The most abundant species were the linyphiid Agnyphantes expunctus (204) and the lycosids Pardosa eiseni (164) and Pardosa hyperborea (107).
  • Soukainen, Arttu; Pajunen, Timo; Korhonen, Tuuli; Saarinen, Joni; Chichorro, Filipe; Jalonen, Sonja; Kiljunen, Niina; Koskivirta, Nelli; Kuurne, Jaakko; Leinonen, Saija; Salonen, Tero; Yrjölä, Veikko; Fukushima, Caroline; Cardoso, Pedro (2020)
    Background In June 2019, an ecology field course of the University of Helsinki was held at Lammi Biological Station, Southern Finland. Within this course, the students familiarised themselves with field work and identification of spiders and explored the diversity of species in the area. Three sampling plots were chosen, one in grassland and two in boreal forest, to demonstrate the sampling techniques and, by applying a standardised protocol (COBRA), contribute to a global spider biodiversity project. New information The collected samples contained a total of 3445 spiders, of which 1956 (57%) were adult. Only adult spiders were accounted for in the inventory due to the impossibility of identification of juveniles. A total of 115 species belonging to 17 families were identified, of which the majority (58 species, 50%) were Linyphiidae. Lycosidae and Theridiidae both had 11 species (10%) and all the other families had seven or fewer species. Linyphiidae were also dominant in terms of adult individuals captured, with 756 (39%), followed by 705 (36%) Lycosidae. Other families with more than 100 individuals were Thomisidae (196, 10%) and Tetragnathidae (102, 5%). The most abundant species were the lycosids Pardosa fulvipes (362, 19%) and Pardosa riparia (290, 15%) and the linyphiid Neriene peltata (123, 6%).