Browsing by Subject "MICROBIAL COMMUNITY STRUCTURE"

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Now showing items 1-7 of 7
  • Koster, Egle; Koster, Kajar; Berninger, Frank; Aaltonen, Heidi; Zhou, Xuan; Pumpanen, Jukka (2017)
    Forest fires are one of the most important natural disturbances in boreal forests, and their occurrence and severity are expected to increase as a result of climate warming. A combination of factors induced by fire leads to a thawing of the near-surface permafrost layer in subarctic boreal forest. Earlier studies reported that an increase in the active layer thickness results in higher carbon dioxide (CO2) and methane (CH4) emissions. We studied changes in CO2, CH4 and nitrous oxide (N2O) fluxes in this study, and the significance of several environmental factors that influence the greenhouse gas (GHG) fluxes at three forest sites that last had fires in 2012, 1990 and 1969, and we compared these to a control area that had no fire for at least 100 years. The soils in our study acted as sources of CO2 and N2O and sinks for CH4. The elapsed time since the last forest fire was the only factor that significantly influenced all studied GHG fluxes. Soil temperature affected the uptake of CH4, and the N2O fluxes were significantly influenced by nitrogen and carbon content of the soil, and by the active layer depth. Results of our study confirm that the impacts of a forest fire on GHGs last for a rather long period of time in boreal forests, and are influenced by the fire induced changes in the ecosystem. (C) 2017 Elsevier B.V. All rights reserved.
  • Kuttim, Martin; Hofsommer, Maaike L.; Robroek, Bjorn J. M.; Signarbieux, Constant; Jassey, Vincent E. J.; Laine, Anna M.; Lamentowicz, Mariusz; Buttler, Alexandre; Ilomets, Mati; Mills, Robert T. E. (2017)
    Decreasing snow cover in winter resulting from climate warming increases the incidence of freeze-thaw cycles (FTCs) in many ecosystems, including peatlands. As peatland ecosystems form a globally significant long-term carbon storage, understanding the effects of changing conditions in winter on carbon dynamics is essential. We studied how FTCs affect peatland carbon cycling by conducting mesocosm experiments with Sphagnum. Our results indicate an overall impeding effect of FTCs on Sphagnum photosynthesis, chlorophyll content, ecosystem respiration and enzymatic processes. A threefold reduction in photosynthesis in the FTC treatment was related to a decrease in chlorophyll content, showing that Sphagnum physiologically suffers from repeated FTCs. In the FTC treatment beta-glucosidase and phosphatase enzymatic activities decreased by 50% and 30%, respectively, whilst alanine remained unaffected, indicating that in peat soils short-term FTCs affect the carbon and phosphorus cycles, but not the nitrogen cycle. Long-term effects of FTCs deserve further studies.
  • Ribeiro-Kumara, Christine; Köster, Egle; Aaltonen, Heidi; Köster, Kajar (2020)
    Wildfires strongly regulate carbon (C) cycling and storage in boreal forests and account for almost 10% of global fire C emissions. However, the anticipated effects of climate change on fire regimes may destabilize current C-climate feedbacks and switch the systems to new stability domains. Since most of these forests are located in upland soils where permafrost is widespread, the expected climate warming and drying combined with more active fires may alter the greenhouse gas (GHG) budgets of boreal forests and trigger unprecedented changes in the global C balance. Therefore, a better understanding of the effects of fires on the various spatial and temporal patterns of GHG fluxes of different physical environments (permafrost and nonpermafrost soils) is fundamental to an understanding of the role played by fire in future climate feedbacks. While large amounts of C are released during fires, postfire GHG fluxes play an important role in boreal C budgets over the short and long term. The timescale over which the vegetation cover regenerates seems to drive the recovery of C emissions after both low- and high-severity fires, regardless of fire-induced changes in soil decomposition. In soils underlain by permafrost, fires increase the active layer depth for several years, which may alter the soil dynamics regulating soil GHG exchange. In a scenario of global warming, prolonged exposition of previously immobilized C could result in higher carbon dioxide emission during the early fire succession. However, without knowledge of the contribution of each respiration component combined with assessment of the warming and drying effects on both labile and recalcitrant soil organic matter throughout the soil profile, we cannot advance on the most relevant feedbacks involving fire and permafrost. Fires seem to have either negligible effects on methane (CH4) fluxes or a slight increase in CH4 uptake. However, permafrost thawing driven by climate or fire could turn upland boreal soils into temporary CH4 sources, depending on how fast the transition from moist to drier soils occurs. Most studies indicate a slight decrease or no significant change in postfire nitrous oxide (N2O) fluxes. However, simulations have shown that the temperature sensitivity of denitrification exceeds that of soil respiration; thus, the effects of warming on soil N2O emissions may be greater than on C emissions.
  • Song, Mengya; Yu, Lei; Jiang, Yonglei; Korpelainen, Helena; Li, Chunyang (2019)
    The stress gradient hypothesis predicts that plant-plant interactions switch between facilitation (positive) and competition (negative) along environmental gradients, with facilitation being more common under high abiotic stress conditions relative to more moderate abiotic stress conditions. Our aim was to reveal, whether the interactions between Populus purdomii Rehder and Salix rehderiana Schneider switch from positive to negative during the early stages of primary succession in the Gongga Mountain glacier retreat region. We also investigated, whether soil age is a major driving factor for the transformation of interactions between neighboring plants. We analyzed differences between intraspecific interactions and interspecific interactions of Populus and Salix under 20- and 40-year-old soil conditions, including plant biomass accumulation and allocation, nutrient absorption and utilization, relative competition intensity, non-structural carbohydrates, foliar carbon and nitrogen isotope composition, mesophyll cell ultrastructure, soil microbial biomass and community structure, extracellular enzyme activities, and soil organic carbon (SOC), soil total nitrogen (TN), soil ammonium (NH4+-N), and soil nitrate (NO3--N) contents. We found that P. purdomii and S. rehderiana growing under interspecific interactions had greater contents of aboveground dry matter, belowground dry matter and total dry matter compared to intraspecific interactions in 20-year-old soil. Furthermore, in 40-year-old soil conditions, the phospholipid fatty acid (PLFA) analysis showed that Populus and Salix exposed to interspecific interactions exhibited lower amounts of gram-positive bacteria, fungi (18,1 omega 9c) and actinomycetes, and lower levels of total PLFAs than those growing under intraspecific interactions. The redundancy analysis (RDA) results demonstrated that soil N was the most important parameter contributing to the composition of microbial communities. In addition, the N-15 stable isotope labeling method showed that Populus and Salix growing under interspecific interactions had higher foliage delta N-15 derived from NO3- (delta N-15-NO3-) than those growing under intraspecific interactions in 20-year-old soil. In summary, our results demonstrated that Populus-Salix interactions exhibited positive effects on survival in 20-year-old soil. Conversely, under 40-year-old soil conditions, Populus-Salix interactions presented negative effects in relation to nutrients and elimination by neighboring plants. Moreover, soil age is a major driving factor for plant-plant interactions that shift from positive to negative with an increasing soil age in the Gongga Mountain glacier forefield. In all, our results support the stress gradient hypothesis. Our findings improve understanding of plant-plant interactions and plant-soil feedbacks during the early stages of soil development, and of the construction of vegetation communities.
  • Lee, Carina; Love, Gordon D.; Hopkins, Melanie J.; Kröger, Björn; Franeck, Franziska; Finnegan, Seth (2019)
    One of the most dramatic episodes of sustained diversification of marine ecosystems in Earth history took place during the Early to Middle Ordovician Period. Changes in climate, oceanographic conditions, and trophic structure are hypothesised to have been major drivers of these biotic events, but relatively little is known about the composition and stability of marine microbial communities controlling biogeochemical cycles at the base of the food chain. This study examines well-preserved, carbonate-rich strata spanning the Tremadocian through Upper Dapingian stages from the Oslobreen Group in Spitsbergen, Norway. Abundant bacterial lipid markers (elevated hopane/sterane ratios, average = 4.8; maximum of 13.1), detection of Chlorobi markers in organic-rich strata, and bulk nitrogen isotopes (delta N-15(total)) averaging 0 to -1 parts per thousand for the open marine facies, suggest episodes of water column redox-stratification and that primary production was likely limited by fixed nitrogen availability in the photic zone. Near absence of the C-30 sterane marine algal biomarker, 24-n-propylcholestane (24-npc), in most samples supports and extends the previously observed hiatus of 24-npc in Early Paleozoic (Late Cambrian to Early Silurian) marine environments. Very high abundances of 3 beta-methylhopanes (average = 9.9%; maximum of 16.8%), extends this biomarker characteristic to Early Ordovician strata for the first time and may reflect enhanced and sustained marine methane cycling during this interval of fluctuating climatic and low sulfate marine conditions. Olenid trilobite fossils are prominent in strata deposited during an interval of marine transgression with biomarker evidence for episodic euxinia/anoxia extending into the photic zone of the water column. (C) 2019 Elsevier Ltd. All rights reserved.
  • Mäki, Mari; Krasnov, D.; Hellén, H.; Noe, S. M.; Bäck, J. (2019)
    The forest floor is a significant contributor to the stand-scale fluxes of biogenic volatile organic compounds. In this study, the effect of tree species (Scots pine vs. Norway spruce) on forest floor fluxes of volatile organic compounds (VOC) was compared in boreal and hemiboreal climates.
  • Parajuli, Anirudra; Gronroos, Mira; Kauppi, Sari; Plociniczak, Tomasz; Roslund, Marja I.; Galitskaya, Polina; Laitinen, Olli H.; Hyöty, Heikki; Jumpponen, Ari; Strömmer, Rauni; Romantschuk, Martin; Hui, Nan; Sinkkonen, Aki (2017)
    Long-term exposure to polyaromatic hydrocarbons (PAHs) has been connected to chronic human health disorders. It is also well-known that i) PAH contamination alters soil bacterial communities, ii) human microbiome is associated with environmental microbiome, and iii) alteration in the abundance of members in several bacterial phyla is associated with adverse or beneficial human health effects. We hypothesized that soil pollution by PAHs altered soil bacterial communities that had known associations with human health. The rationale behind our study was to increase understanding and potentially facilitate reconsidering factors that lead to health disorders in areas characterized by PAH contamination. Large containers filled with either spruce forest soil, pine forest soil, peat, or glacial sand were left to incubate or contaminated with creosote. Biological degradation of PAHs was monitored using GC-MS, and the bacterial community composition was analyzed using 454 pyrosequencing. Proteobacteria had higher and Actinobacteria and Bacteroidetes had lower relative abundance in creosote contaminated soils than in non-contaminated soils. Earlier studies have demonstrated that an increase in the abundance of Proteobacteria and decreased abundance of the phyla Actinobacteria and Bacteroidetes are particularly associated with adverse health outcomes and immunological disorders. Therefore, we propose that pollution-induced shifts in natural soil bacterial community, like in PAH-polluted areas, can contribute to the prevalence of chronic diseases. We encourage studies that simultaneously address the classic "adverse toxin effect" paradigm and our novel "altered environmental microbiome" hypothesis.