Browsing by Subject "OAK"

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  • Sageman-Furnas, Katelyn; Nurmi, Markus; Contag, Meike; Ploetner, Bjoern; Alseekh, Saleh; Wiszniewski, Andrew; Fernie, Alisdair R.; Smith, Lisa M.; Laitinen, Roosa A. E. (2022)
    Hybrids between Arabidopsis thaliana accessions are important in revealing the consequences of epistatic interactions in plants. F-1 hybrids between the A. thaliana accessions displaying either defense or developmental phenotypes have been revealing the roles of the underlying epistatic genes. The interaction of two naturally occurring alleles of the OUTGROWTH-ASSOCIATED KINASE (OAK) gene in Sha and Lag2-2, previously shown to cause a similar phenotype in a different allelic combination in A. thaliana, was required for the hybrid phenotype. Outgrowth formation in the hybrids was associated with reduced levels of salicylic acid, jasmonic acid and abscisic acid in petioles and the application of these hormones mitigated the formation of the outgrowths. Moreover, different abiotic stresses were found to mitigate the outgrowth phenotype. The involvement of stress and hormone signaling in outgrowth formation was supported by a global transcriptome analysis, which additionally revealed that TCP1, a transcription factor known to regulate leaf growth and symmetry, was downregulated in the outgrowth tissue. These results demonstrate that a combination of natural alleles of OAK regulates growth and development through the integration of hormone and stress signals and highlight the importance of natural variation as a resource to discover the function of gene variants that are not present in the most studied accessions of A. thaliana.
  • Peuhu, Elina; Thomssen, Pia-Maria; Siitonen, Juha (2019)
    Hollow trees are an important habitat for a large number of saproxylic invertebrates, many of which are rare or threatened. Large old trees occur frequently in cities, but the saproxylic fauna inhabiting these trees has been poorly studied. Sampling in urban areas includes the risk of trap failure due to human interference, which needs to be considered when designing sampling. The aim of our study was to find an efficient trap type for sampling saproxylic beetles in hollow urban trees. We compared the species richness and species composition of saproxylic beetle assemblages between trunk window, aluminium foil tray and pitfall traps placed inside hollow trees in the Helsinki metropolitan area, Finland. A total of 30 traps of each trap type were set in 15 trees. The traps caught a total of 4004 saproxylic beetle individuals belonging to 131 species. Trunk window and aluminium foil traps had similar assemblage and trapping efficiency, and were significantly more efficient than pitfall traps. However, pitfall traps caught certain species more efficiently than the other two trap types. Time spent separating insects from samples was the most laborious work stage. The time increased with increasing sample weight, i.e. the amount of wood mould in the trap. Trunk windows were the most efficient trap type also in terms of saproxylic species and individuals per handling time. We conclude that saproxylic beetle fauna living in hollow urban trees can be efficiently sampled with small trunk window traps or containers placed on the inner walls of hollows.
  • Branco, Vasco Veiga; Henriques, Sergio; Rego, Carla; Cardoso, Pedro (2019)
    Background The Iberian Peninsula is a diverse region that contains several different bioclimatic areas within one confined space, leading to high biodiversity. Portugal distinguishes itself in this regard by having a high count of spider species (829) and a remarkable number of endemic spider species (42) for its size (approximately 88,890 km2). However, only one non-endemic species (Macrothele calpeiana) is currently protected by the Natura 2000 network and no endemic spider species (aside from Anapistula ataecina) has been assessed according to the IUCN Red List criteria. The objective of this paper is to assess all non-assessed endemic species (41) as well as M. calpeiana. New information The 43 assessed species belong to 15 families, the richest being Zodariidae, Dysderidae, Linyphiidae and Gnaphosidae. In general and despite the lack of information on more than half the species, general patterns and trends could be found. Only 18 species (including M. calpeiana and A. ataecina) had enough data to allow their EOO (extent of occurrence) and AOO (area of occurrence) to be quantified. Of these, we modelled the distribution of 14 epigean species, eight of which were found to be widespread. The remaining six fulfilled at least one of the criteria for threatened species. Four species are troglobiont, all of which meet the EOO and AOO thresholds for threatened species. The remaining 25 Portuguese endemics had no reliable information on their range. Only nine species out of the 43 are estimated to be in decline and 11 are stable, with the majority of species having no information on trends (23 species). Forest areas, sand dunes, shrublands and caves host the majority of species. As such, the threats to Portuguese endemics reflect the diversity of habitats they occupy. Urbanisation and climate change seem to be the most important threats to these species, although other factors are also important and represented across the data. A considerable proportion of the currently known Portuguese endemic species can be found in national protected areas, with higher prominence to the Serras de Aire e Candeeiros, Douro Internacional, Vale do Guadiana, Sudoeste Alentejano e Costa Vicentina and Arrabida Natural Parks. These correspond mostly to areas that have been particularly well sampled during the last two decades.
  • Martinovic, Tijana; Odriozola, Inaki; Masinova, Tereza; Bahnmann, Barbara Doreen; Kohout, Petr; Sedlak, Petr; Merunkova, Kristina; Vetrovsky, Tomas; Tomsovsky, Michal; Ovaskainen, Otso; Baldrian, Petr (2021)
    Although spatial and temporal variation are both important components structuring microbial communities, the exact quantification of temporal turnover rates of fungi and bacteria has not been performed to date. In this study, we utilised repeated resampling of bacterial and fungal communities at specific locations across multiple years to describe their patterns and rates of temporal turnover. Our results show that microbial communities undergo temporal change at a rate of 0.010-0.025 per year (in units of Sorensen similarity), and the change in soil is slightly faster in fungi than in bacteria, with bacterial communities changing more rapidly in litter than soil. Importantly, temporal development differs across fungal guilds and bacterial phyla with different ecologies. While some microbial guilds show consistent responses across regional locations, others show site-specific development with weak general patterns. These results indicate that guild-level resolution is important for understanding microbial community assembly, dynamics and responses to environmental factors.