Browsing by Subject "PARAMETERS"

Sort by: Order: Results:

Now showing items 1-20 of 45
  • Pausch, Hubert; Venhoranta, Heli; Wurmser, Christine; Hakala, Kalle; Iso-Touru, Terhi; Sironen, Anu; Vingborg, Rikke K.; Lohi, Hannes; Soderquist, Lennart; Fries, Ruedi; Andersson, Magnus (2016)
    Background: Artificial insemination is widely used in many cattle breeding programs. Semen samples of breeding bulls are collected and closely examined immediately after collection at artificial insemination centers. Only ejaculates without anomalous findings are retained for artificial insemination. Although morphological aberrations of the spermatozoa are a frequent reason for discarding ejaculates, the genetic determinants underlying poor semen quality are scarcely understood. Results: A tail stump sperm defect was observed in three bulls of the Swedish Red cattle breed. The spermatozoa of affected bulls were immotile because of severely disorganized tails indicating disturbed spermatogenesis. We genotyped three affected bulls and 18 unaffected male half-sibs at 46,035 SNPs and performed homozygosity mapping to map the fertility disorder to an 8.42 Mb interval on bovine chromosome 13. The analysis of whole-genome re-sequencing data of an affected bull and 300 unaffected animals from eleven cattle breeds other than Swedish Red revealed a 1 bp deletion (Chr13: 24,301,425 bp, ss1815612719) in the eleventh exon of the armadillo repeat containing 3-encoding gene (ARMC3) that was compatible with the supposed recessive mode of inheritance. The deletion is expected to alter the reading frame and to induce premature translation termination (p.A451fs26). The mutated protein is shortened by 401 amino acids (46 %) and lacks domains that are likely essential for normal protein function. Conclusions: We report the phenotypic and genetic characterization of a sterilizing tail stump sperm defect in the Swedish Red cattle breed. Exploiting high-density genotypes and massive re-sequencing data enabled us to identify the most likely causal mutation for the fertility disorder in bovine ARMC3. Our results provide the basis for monitoring the mutated variant in the Swedish Red cattle population and for the early identification of infertile animals.
  • Li, Dong; Chang, Xiao; Connolly, John J.; Tian, Lifeng; Liu, Yichuan; Bhoj, Elizabeth J.; Robinson, Nora; Abrams, Debra; Li, Yun R.; Bradfield, Jonathan P.; Kim, Cecilia E.; Li, Jin; Wang, Fengxiang; Snyder, James; Lemma, Maria; Hou, Cuiping; Wei, Zhi; Guo, Yiran; Qiu, Haijun; Mentch, Frank D.; Thomas, Kelly A.; Chiavacci, Rosetta M.; Cone, Roger; Li, Bingshan; Sleiman, Patrick A.; Hakonarson, Hakon; Eating Disorders Working Group of the Psychiatric Genomics Consortium; Kaprio, Jaakko; Palotie, Aarno; Raevuori-Helkamaa, Anu; Ripatti, Samuli; Price Fdn Collaborative Grp (2017)
    We conducted a genome-wide association study (GWAS) of anorexia nervosa (AN) using a stringently defined phenotype. Analysis of phenotypic variability led to the identification of a specific genetic risk factor that approached genome-wide significance (rs929626 in EBF1 (Early B-Cell Factor 1); P = 2.04 x 10(-7); OR = 0.7; 95% confidence interval (CI) = 0.61-0.8) with independent replication (P = 0.04), suggesting a variant-mediated dysregulation of leptin signaling may play a role in AN. Multiple SNPs in LD with the variant support the nominal association. This demonstrates that although the clinical and etiologic heterogeneity of AN is universally recognized, further careful sub-typing of cases may provide more precise genomic signals. In this study, through a refinement of the phenotype spectrum of AN, we present a replicable GWAS signal that is nominally associated with AN, highlighting a potentially important candidate locus for further investigation.
  • Iso-Touru, Terhi; Wurmser, Christine; Venhoranta, Heli; Hiltpold, Maya; Savolainen, Tujia; Sironen, Anu; Fischer, Konrad; Flisikowski, Krzysztof; Fries, Ruedi; Vicente-Carrillo, Alejandro; Alvarez-Rodriguez, Manuel; Nagy, Szabolcs; Mutikainen, Mervi; Peippo, Jaana; Taponen, Juhani; Sahana, Goutam; Guldbrandtsen, Bernt; Simonen, Henri; Rodriguez-Martinez, Heriberto; Andersson, Magnus; Pausch, Hubert (2019)
    Background: Cattle populations are highly amenable to the genetic mapping of male reproductive traits because longitudinal data on ejaculate quality and dense microarray-derived genotypes are available for thousands of artificial insemination bulls. Two young Nordic Red bulls delivered sperm with low progressive motility (i.e., asthenospermia) during a semen collection period of more than four months. The bulls were related through a common ancestor on both their paternal and maternal ancestry. Thus, a recessive mode of inheritance of asthenospermia was suspected. Results: Both bulls were genotyped at 54,001 SNPs using the Illumina BovineSNP50 Bead chip. A scan for autozygosity revealed that they were identical by descent for a 2.98Mb segment located on bovine chromosome 25. This haplotype was not found in the homozygous state in 8557 fertile bulls although five homozygous haplotype carriers were expected (P=0.018). Whole genome-sequencing uncovered that both asthenospermic bulls were homozygous for a mutation that disrupts a canonical 5 splice donor site of CCDC189 encoding the coiled-coil domain containing protein 189. Transcription analysis showed that the derived allele activates a cryptic splice site resulting in a frameshift and premature termination of translation. The mutated CCDC189 protein is truncated by more than 40%, thus lacking the flagellar C1a complex subunit C1a-32 that is supposed to modulate the physiological movement of the sperm flagella. The mutant allele occurs at a frequency of 2.5% in Nordic Red cattle. Conclusions; Our study in cattle uncovered that CCDC189 is required for physiological movement of sperm flagella thus enabling active progression of spermatozoa and fertilization. A direct gene test may be implemented to monitor the asthenospermia-associated allele and prevent the birth of homozygous bulls that are infertile. Our results have been integrated in the Online Mendelian Inheritance in Animals (OMIA) database (
  • Pettersson, Kati; Jagadeesan, Sharman; Lukander, Kristian; Henelius, Andreas; Haeggström, Edward; Müller, Kiti (2013)
  • Pekkanen, Timo T.; Valkai, Laszlo; Joshi, Satya P.; Lendvay, Gyorgy; Heinonen, Petri; Timonen, Raimo S.; Eskola, Arkke J. (2022)
    We have used laser-photolysis-photoionization mass spectrometry, quantum chemical calculations, and master equation simulations to investigate the kinetics of the reaction between (E/Z)-pent-3-en-2-yl (CH3-CH - CH - CH-CH3), a resonance-stabilised hydrocarbon radical, and molecular oxygen. The time-resolved experiments were performed over a wide temperature range (240-750 K) at relatively low pressures (0.4-7 Torr) under pseudo-first-order conditions (excess [O-2]). Helium bath gas was used in most experiments, but nitrogen was employed in a few measurements to investigate the effect of a heavier collider on the kinetics of the studied reaction. The experimental traces were directly used to optimise parameters in the master equation model using the recently implemented trace fitting feature in the MESMER program. At low temperatures (T < 300 K), the reaction proceeds by barrierless recombination reactions to form peroxyl adducts, and the radical traces are single-exponential. Between 326 K and 376 K, equilibration between the reactants and the peroxyl adducts is observed, and the radical traces are multi-exponential. Interestingly, at temperatures above 500 K, single-exponential decays were again observed, although the reaction is much slower than at low temperatures. The master equation simulations revealed that at both low and high temperatures, the radical decay rate is governed by a single eigenvalue. At low temperatures, this eigenvalue corresponds to recombination reactions, and at high temperatures to the phenomenological formation of bimolecular products. Between low and high temperatures (the exact temperature thresholds depend on [O-2]), there is a region of avoided crossing in which the rate coefficient "jumps" from one eigencurve to the other. Although chemically significant eigenvalues are not well separated from internal energy relaxation eigenvalues at elevated temperatures (600 K at 0.01 bar, 850 K at 100 bar), we observed that many of the Bartis-Widom rate coefficients produced by the master equation model were valid up to 1500 K. Our simulations predict that the most important reaction channel at high temperatures is the formation of (E/Z)-penta-1,3-diene and hydroperoxyl. The experimentally constrained master equation model was used to simulate the title reaction over a wide range of conditions. To facilitate the use of our results in autoignition and combustion models, modified Arrhenius representations are given for the most important reaction channels.
  • Halme, Eelis; Ihalainen, Olli; Korpela, Ilkka; Mõttus, Matti (2022)
    The retrieval of forest variables from optical remote sensing data using physically-based models is an ill-posed problem and does not make full use of the high spatial resolution imagery that is becoming available globally. A possible solution to this is to use prior information about the retrieved variables, which constrains the possible solutions and reduces uncertainty in forest variable estimation. Therefore, we tried to quantify physically-based parameters that could be retrieved using the second-order statistics of measured and simulated very-high-resolution (pixel size less than 1 m) images of Finnish boreal forests. These forests have a well-defined structure and are usually not closed, i.e. the reflected signal has a considerable contribution from a green forest floor. We retrieved the second-order statistics using variograms and Fourier amplitude spectra. We found, in line with previous studies, that the range of variograms correlates well (r = 0.83) with the mean crown diameter for spatially homogeneous forest patches, and it can be used to estimate crown diameters with reasonable accuracy (RMSE = 0.42 m). We present a novel approach, which uses the Fourier amplitude spectrum to study the spatial structure of a forest. The approach provided encouraging results with the measured data: despite the lower accuracy (RMSE = 0.67 m) compared with variograms, we found that it could also be used to estimate mean crown diameters for heterogeneous forest areas. The Fourier amplitude spectrum approach did not work with the simulated images. Our results highlight the possibility to obtain further information from very-high-resolution images of forests to solve the ill-posed problem of forest variable estimation from optical remote sensing data using physically-based models.
  • Siren, Jukka; Lens, Luc; Cousseau, Laurence; Ovaskainen, Otso (2018)
    1. Individual-based models (IBMs) allow realistic and flexible modelling of ecological systems, but their parameterization with empirical data is statistically and computationally challenging. Approximate Bayesian computation (ABC) has been proposed as an efficient approach for inference with IBMs, but its applicability to data on natural populations has not been yet fully explored. 2. We construct an IBM for the metapopulation dynamics of a species inhabiting a fragmented patch network, and develop an ABC method for parameterization of the model. We consider several scenarios of data availability from count data to combination of mark-recapture and genetic data. We analyse both simulated and real data on white-starred robin (Pogonocichla stellata), a passerine bird living in montane forest environment in Kenya, and assess how the amount and type of data affect the estimates of model parameters and indicators of population state. 3. The indicators of the population state could be reliably estimated using the ABC method, but full parameterization was not achieved due to strong posterior correlations between model parameters. While the combination of the data types did not provide more accurate estimates for most of the indicators of population state or model parameters than the most informative data type (ringing data or genetic data) alone, the combined data allowed robust simultaneous estimation of all unknown quantities. 4. Our results show that ABC methods provide a powerful and flexible technique forparameterizing complex IBMs with multiple data sources, and assessing the dynamics of the population in a robust manner.
  • Slighoua, Meryem; Mahdi, Ismail; Amrati, Fatima ez-Zahra; Di Cristo, Francesca; Amaghnouje, Amal; Grafov, Andrey; Boucetta, Nabil; Bari, Amina; Bousta, Dalila (2021)
    Ethnopharmacological relevance: Since the dawn of time, medicinal and aromatic plants (AMPs) represent a precious heritage for humanity, especially in developing countries, who exploit their virtues in traditional pharmacopoeia to cope with health problems such as diabetes, kidney stones, ulcer, and digestive disorders. Petroselinum sativum Hoffm. belongs to Apiaceae family. It is traditionally used to treat arterial hypertension, diabetes, cardiac disease, renal disease, and recently reported as a plant endowed with a female anti-infertility effect. Aim of the study: This study aims to evaluate the in vivo effect of hydro-ethanolic extract and polyphenols of Petroselinum sativum Hoffm. on cholesterol, protein and estrogen levels, and characterize the chemical composition of polyphenolic fraction. In addition, acute toxicity and anti-inflammatory activity of tested extract was also investigated. Materials and methods: Chemical composition of polyphenolic fraction was determined using High-Performance Liquid Chromatography with Diode-Array Detection (HPLC-DAD). First, toxicological investigations including sub-acute toxicity were performed by measuring animals' weights daily for four weeks. Afterwards, histopathological examination of livers and kidneys, and serum assay of ASAT and ALAT were also checked. Next, the acute in vivo anti-inflammatory study of the hydro-ethanolic extract and polyphenols of Petroselinum sativum Hoffm. versus Indomethacin was conducted. Furthermore, we evaluated the estrogenic effect of its hydroethanolic extract and the polyphenolic fraction following biochemical assays for the determination of proteins, cholesterol and estrogen levels. Results: The results revealed the presence of some phenolic compounds mainly ferulic acid, gallic acid and quercetin. Petroselinum sativum Hoffm. extracts also showed no evidence of hepatotoxicity nor nephrotoxicity, with remarkable anti-inflammatory activity, as well as a significant estrogenic effect compared to negative control. Conclusion: This study provides a scope of the potential use of Petroselinum sativum Hoffm. extracts in counteracting female infertility issues.
  • Muinonen, K.; Torppa, J.; Wang, X-B; Cellino, A.; Penttilä, A. (2020)
    Context. We assess statistical inversion of asteroid rotation periods, pole orientations, shapes, and phase curve parameters from photometric lightcurve observations, here sparse data from the ESA Gaia space mission (Data Release 2) or dense and sparse data from ground-based observing programs.Aims. Assuming general convex shapes, we develop inverse methods for characterizing the Bayesian a posteriori probability density of the parameters (unknowns). We consider both random and systematic uncertainties (errors) in the observations, and assign weights to the observations with the help of Bayesian a priori probability densities.Methods. For general convex shapes comprising large numbers of parameters, we developed a Markov-chain Monte Carlo sampler (MCMC) with a novel proposal probability density function based on the simulation of virtual observations giving rise to virtual least-squares solutions. We utilized these least-squares solutions to construct a proposal probability density for MCMC sampling. For inverse methods involving triaxial ellipsoids, we update the uncertainty model for the observations.Results. We demonstrate the utilization of the inverse methods for three asteroids with Gaia photometry from Data Release 2: (21) Lutetia, (26) Proserpina, and (585) Bilkis. First, we validated the convex inverse methods using the combined ground-based and Gaia data for Lutetia, arriving at rotation and shape models in agreement with those derived with the help of Rosetta space mission data. Second, we applied the convex inverse methods to Proserpina and Bilkis, illustrating the potential of the Gaia photometry for setting constraints on asteroid light scattering as a function of the phase angle (the Sun-object-observer angle). Third, with the help of triaxial ellipsoid inversion as applied to Gaia photometry only, we provide additional proof that the absolute Gaia photometry alone can yield meaningful photometric slope parameters. Fourth, for (585) Bilkis, we report, with 1-sigma uncertainties, a refined rotation period of (8.5750559 0.0000026) h, pole longitude of 320.6 degrees +/- 1.2 degrees, pole latitude of - 25.6 degrees +/- 1.7 degrees, and the first shape model and its uncertainties from convex inversion.Conclusions. We conclude that the inverse methods provide realistic uncertainty estimators for the lightcurve inversion problem and that the Gaia photometry can provide an asteroid taxonomy based on the phase curves.
  • Manninen, A. J.; Marke, T.; Tuononen, M.; O'Connor, E. J. (2018)
    We present a method using Doppler lidar data for identifying the main sources of turbulent mixing within the atmospheric boundary layer. The method identifies the presence of turbulence and then assigns a turbulent source by combining several lidar quantities: attenuated backscatter coefficient, vertical velocity skewness, dissipation rate of turbulent kinetic energy, and vector wind shear. Both buoyancy-driven and shear-driven situations are identified, and the method operates in both clear-sky and cloud-topped conditions, with some reservations in precipitation. To capture the full seasonal cycle, the classification method was applied to more than 1year of data from two sites, Hyytiala, Finland, and Julich, Germany. Analysis showed seasonal variation in the diurnal cycle at both sites; a clear diurnal cycle was observed in spring, summer, and autumn seasons, but due to their respective latitudes, a weaker cycle in winter at Julich, and almost non-existent at Hyytiala. Additionally, there are significant contributions from sources other than convective mixing, with cloud-driven mixing being observed even within the first 500m above ground. Also evident is the considerable amount of nocturnal mixing within the lowest 500m at both sites, especially during the winter. The presence of a low-level jet was often detected when sources of nocturnal mixing were diagnosed as wind shear. The classification scheme and the climatology extracted from the classification provide insight into the processes responsible for mixing within the atmospheric boundary layer, how variable in space and time these can be, and how they vary with location. Key Points
  • Ruonala, Verneri; Pekkonen, Eero; Airaksinen, Olavi; Kankaanpää, Markku; Karjalainen, Pasi A.; Rissanen, Saara M. (2022)
    Objective Deep brain stimulation (DBS) is an effective treatment for motor symptoms of advanced Parkinson's disease (PD). Currently, DBS programming outcome is based on a clinical assessment. In an optimal situation, an objectively measurable feature would assist the operator to select the appropriate settings for DBS. Surface electromyographic (EMG) measurements have been used to characterise the motor symptoms of PD with good results; with proper methodology, these measurements could be used as an aid to program DBS. Methods Muscle activation measurements were performed for 13 patients who had advanced PD and were treated with DBS. The DBS pulse voltage, frequency, and width were changed during the measurements. The measured EMG signals were analysed with parameters that characterise the EMG signal morphology, and the results were compared to the clinical outcome of the adjustment. Results The EMG signal correlation dimension, recurrence rate, and kurtosis changed significantly when the DBS settings were changed. DBS adjustment affected the signal recurrence rate the most. Relative to the optimal settings, increased recurrence rates (median ± IQR) 1.1 ± 0.5 (-0.3 V), 1.3 ± 1.1 (+0.3 V), 1.7 ± 0.4 (-30 Hz), 1.7 ± 0.8 (+30 Hz), 2.0 ± 1.7 (+30 μs), and 1.5 ± 1.1 (DBS off) were observed. With optimal stimulation settings, the patients' Unified Parkinson's Disease Rating Scale motor part (UPDRS-III) score decreased by 35% on average compared to turning the device off. However, the changes in UPRDS-III arm tremor and rigidity scores did not differ significantly in any settings compared to the optimal stimulation settings. Conclusion Adjustment of DBS treatment alters the muscle activation patterns in PD patients. The changes in the muscle activation patterns can be observed with EMG, and the parameters calculated from the signals differ between optimal and non-optimal settings of DBS. This provides a possibility for using the EMG-based measurement to aid the clinicians to adjust the DBS.
  • Savelainen, Matti; Väliviita, Jussi; Walia, Parampreet; Rusak, Stanislav; Kurki-Suonio, Hannu (2013)
  • Kwiatek, Grzegorz; Saarno, Tero; Ader, Thomas; Bluemle, Felix; Bohnhoff, Marco; Chendorain, Michael; Dresen, Georg; Heikkinen, Pekka; Kukkonen, Ilmo; Leary, Peter; Leonhardt, Maria; Malin, Peter; Martínez-Garzón, Patricia; Passmore, Kevin; Passmore, Paul; Valenzuela, Sergio; Wollin, Christopher (2019)
    We show that near–real-time seismic monitoring of fluid injection allowed control of induced earthquakes during the stimulation of a 6.1-km-deep geothermal well near Helsinki, Finland. A total of 18,160 m3 of fresh water was pumped into crystalline rocks over 49 days in June to July 2018. Seismic monitoring was performed with a 24-station borehole seismometer network. Using near–real-time information on induced-earthquake rates, locations, magnitudes, and evolution of seismic and hydraulic energy, pumping was either stopped or varied—in the latter case, between well-head pressures of 60 and 90 MPa and flow rates of 400 and 800 liters/min. This procedure avoided the nucleation of a project-stopping magnitude MW 2.0 induced earthquake, a limit set by local authorities. Our results suggest a possible physics-based approach to controlling stimulation-induced seismicity in geothermal projects.
  • Ho, Minh Thao; Zhu, Jinlei; Bansal, Nidhi; Boyce, Mary; Le, Thao (2021)
    Effects of pH and heating on deamidation of whey protein concentrate (WPC) solution and functional properties of resultant spray-dried WPC powder were investigated. Temperature and heating time affected deamidation rates with the highest reactivities for WPC solutions heated at 120 °C for 15 min and 145 °C for 120 s. Deamidation sites were pH dependent: pH 3 induced more glutamine deamidation; pH 10 induced more asparagine deamidation. The functional properties of spray-dried WPC powders were also pH dependent. WPC solution adjusted to pH 3 and heated at 145 °C for 120 s (prior to spray drying) exhibited a reduction in solubility and foamability, but markedly improved foam stability of the resultant powders; meanwhile, the properties of powders were not significantly impacted by pH adjustment to 10.0 and heating at 145 °C for 120 s. However, pH 3 and 10 with and without heating significantly improved emulsifying properties of spray-dried WPC.
  • Rollett, T.; Moestl, C.; Isavnin, A.; Davies, J. A.; Kubicka, M.; Amerstorfer, U. V.; Harrison, R. A. (2016)
    In this study, we present a new method for forecasting arrival times and speeds of coronal mass ejections (CMEs) at any location in the inner heliosphere. This new approach enables the adoption of a highly flexible geometrical shape for the CME front with an adjustable CME angular width and an adjustable radius of curvature of its leading edge, i.e., the assumed geometry is elliptical. Using, as input, Solar TErrestrial RElations Observatory (STEREO) heliospheric imager (HI) observations, a new elliptic conversion (ElCon) method is introduced and combined with the use of drag-based model (DBM) fitting to quantify the deceleration or acceleration experienced by CMEs during propagation. The result is then used as input for the Ellipse Evolution Model (ElEvo). Together, ElCon, DBM fitting, and ElEvo form the novel ElEvoHI forecasting utility. To demonstrate the applicability of ElEvoHI, we forecast the arrival times and speeds of 21 CMEs remotely observed from STEREO/HI and compare them to in situ arrival times and speeds at 1 AU. Compared to the commonly used STEREO/HI fitting techniques (Fixed-phi, Harmonic Mean, and Self-similar Expansion fitting), ElEvoHI improves the arrival time forecast by about 2 to +/- 6.5 hr and the arrival speed forecast by approximate to 250 to +/- 53 km s(-1), depending on the ellipse aspect ratio assumed. In particular, the remarkable improvement of the arrival speed prediction is potentially beneficial for predicting geomagnetic storm strength at Earth.
  • Tiira, Jussi; Moisseev, Dmitri N.; von Lerber, Annakaisa; Ori, Davide; Tokay, Ali; Bliven, Larry F.; Petersen, Walter (2016)
    In this study measurements collected during winters 2013/2014 and 2014/2015 at the University of Helsinki measurement station in Hyytiala are used to investigate connections between ensemble mean snow density, particle fall velocity and parameters of the particle size distribution (PSD). The density of snow is derived from measurements of particle fall velocity and PSD, provided by a particle video imager, and weighing gauge measurements of precipitation rate. Validity of the retrieved density values is checked against snow depth measurements. A relation retrieved for the ensemble mean snow density and median volume diameter is in general agreement with previous studies, but it is observed to vary significantly from one winter to the other. From these observations, characteristic mass-dimensional relations of snow are retrieved. For snow rates more than 0.2 mm h(-1), a correlation between the intercept parameter of normalized gamma PSD and median volume diameter was observed.
  • Saponaro, Giulia; Kolmonen, Pekka; Sogacheva, Larisa; Rodriguez, Edith; Virtanen, Timo; De Leeuw, Gerrit (2017)
    Retrieved from the Moderate Resolution Imaging Spectroradiometer (MODIS) on-board the Aqua satellite, 12 years (2003-2014) of aerosol and cloud properties were used to statistically quantify aerosol-cloud interaction (ACI) over the Baltic Sea region, including the relatively clean Fennoscandia and the more polluted central-eastern Europe. These areas allowed us to study the effects of different aerosol types and concentrations on macro-and microphysical properties of clouds: cloud effective radius (CER), cloud fraction (CF), cloud optical thickness (COT), cloud liquid water path (LWP) and cloud-top height (CTH). Aerosol properties used are aerosol optical depth (AOD), Angstrom exponent (AE) and aerosol index (AI). The study was limited to low-level water clouds in the summer. The vertical distributions of the relationships between cloud properties and aerosols show an effect of aerosols on low-level water clouds. CF, COT, LWP and CTH tend to increase with aerosol loading, indicating changes in the cloud structure, while the effective radius of cloud droplets decreases. The ACI is larger at relatively low cloud-top levels, between 900 and 700 hPa. Most of the studied cloud variables were unaffected by the lower-tropospheric stability (LTS), except for the cloud fraction. The spatial distribution of aerosol and cloud parameters and ACI, here defined as the change in CER as a function of aerosol concentration for a fixed LWP, shows positive and statistically significant ACI over the Baltic Sea and Fennoscandia, with the former having the largest values. Small negative ACI values are observed in central-eastern Europe, suggesting that large aerosol concentrations saturate the ACI.
  • Virtanen, Irina; Kalleinen, Nea; Urrila, Anna S.; Polo-Kantola, Päivi (2018)
    Objectives: In sleep laboratory studies, the new environment is generally considered to disturb sleep during the first night. However, older women have rarely been studied. Although menopause and hormone therapy affect sleep, their impact on the first-night effect is virtually unknown. Participants: Four groups of women with no sleep laboratory experience: young on hormonal contraceptives (n = 11, 23.1 [0.5] years), perimenopausal (n = 15, 48.0 (0.4] years), postmenopausal without hormone therapy (HT; off-HT, n = 22, 63.4 [0.8] years) and postmenopausal with HT (n = 16, 63.1 [0.9] years). Procedure: A cross-sectional study. Methods: Polysomnography was performed over two consecutive nights and the first-night effect and group differences were evaluated. Questionnaire-based insomnia and sleepiness scores were correlated to sleep variables and their between-night changes. Results: Although sleep in young women was deeper and less fragmented than in the other groups, first-night effect was similar in all study groups. Total sleep time, sleep efficiency, and S1 and S2 sleep increased, and wake after sleep onset, awakenings per hour of sleep, S2 and REM latencies, and percentage of SWS decreased from the first to the second night. Perimenopausal women had more insomnia complaints than other women. Insomnia complaints were associated with more disturbed sleep but not with the first-night effect. Conclusions: A first night in a sleep laboratory elicits a marked interference of sleep architecture in women of all ages, with a carryover effect of lighter sleep on the second study night. Menopausal state, HT use, or insomnia complaints do not modify this effect.
  • Lintusaari, Jarno; Gutmann, Michael U.; Dutta, Ritabrata; Kaski, Samuel; Corander, Jukka (2017)
    Bayesian inference plays an important role in phylogenetics, evolutionary biology, and in many other branches of science. It provides a principled framework for dealing with uncertainty and quantifying how it changes in the light of new evidence. For many complex models and inference problems, however, only approximate quantitative answers are obtainable. Approximate Bayesian computation (ABC) refers to a family of algorithms for approximate inference that makes a minimal set of assumptions by only requiring that sampling from a model is possible. We explain here the fundamentals of ABC, review the classical algorithms, and highlight recent developments.
  • Janvier, Miho; Winslow, Reka; Good, Simon; Bonhomme, Elise; Démoulin, Pascal; Dasso, Sergio; Möstl, Christian; Lugaz, Noé; Amerstorfer, Tanja; Soubrié, Elie; Boakes, Peter D. (2019)
    We study interplanetary coronal mass ejections (ICMEs) measured by probes at different heliocentric distances (0.3-1 AU) to investigate the propagation of ICMEs in the inner heliosphere and determine how the generic features of ICMEs change with heliospheric distance. Using data from the MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER), Venus Express and ACE spacecraft, we analyze with the superposed epoch technique the profiles of ICME substructures, namely, the sheath and the magnetic ejecta. We determine that the median magnetic field magnitude in the sheath correlates well with ICME speeds at 1 AU, and we use this proxy to order the ICMEs at all spacecraft. We then investigate the typical ICME profiles for three categories equivalent to slow, intermediate, and fast ICMEs. Contrary to fast ICMEs, slow ICMEs have a weaker solar wind field at the front and a more symmetric magnetic field profile. We find the asymmetry to be less pronounced at Earth than at Mercury, indicating a relaxation taking place as ICMEs propagate. We also find that the magnetic field intensities in the wake region of the ICMEs do not go back to the pre-ICME solar wind intensities, suggesting that the effects of ICMEs on the ambient solar wind last longer than the duration of the transient event. Such results provide an indication of physical processes that need to be reproduced by numerical simulations of ICME propagation. The samples studied here will be greatly improved by future missions dedicated to the exploration of the inner heliosphere, such as Parker Solar Probe and Solar Orbiter.