Nhlbi Trans-Omics Precision Med To; Natarajan, Pradeep; Pampana, Akhil; Graham, Sarah E.; Ruotsalainen, Sanni E.; Perry, James A.; de Vries, Paul S.; Broome, Jai G.; Palotie, Aarno; Ripatti, Samuli; Daly, Mark; Kaprio, Jaakko; Pulkki, Kari; Ripatti, Samuli; Kettunen, Johannes; Laaksonen, Reijo; Rinne, Juha; Pikkarainen, Sampsa; Eklund, Kari; Kauppi, Paula; Sinisalo, Juha; Taskinen, Marja-Riitta; Tuomi, Tiinamaija; Joensuu, Heikki; Meretoja, Tuomo; Aaltonen, Lauri; Turunen, Joni; Seitsonen, Sanna; Hannula-Jouppi, Katariina; Jalanko, Anu; Kajanne, Risto; Lyhs, Ulrike; Kaunisto, Mari; Kurki, Mitja; Karjalainen, Juha; Havulinna, Aki; Palta, Priit; Parolo, Pietro Della Briotta; Harju, Jarmo; Lehisto, Arto; Ganna, Andrea; Llorens, Vincent; Koskinen, Miika; Heikkinen, Sami; Loukola, Anu; Donner, Kati; Nunez-Fontarnau, Javier; Brein, Georg; Laivuori, Hannele; Kiiskinen, Tuomo
(2021)
Autosomal genetic analyses of blood lipids have yielded key insights for coronary heart disease (CHD). However, X chromosome genetic variation is understudied for blood lipids in large sample sizes. We now analyze genetic and blood lipid data in a high-coverage whole X chromosome sequencing study of 65,322 multi-ancestry participants and perform replication among 456,893 European participants. Common alleles on chromosome Xq23 are strongly associated with reduced total cholesterol, LDL cholesterol, and triglycerides (min P=8.5x10(-72)), with similar effects for males and females. Chromosome Xq23 lipid-lowering alleles are associated with reduced odds for CHD among 42,545 cases and 591,247 controls (P=1.7x10(-4)), and reduced odds for diabetes mellitus type 2 among 54,095 cases and 573,885 controls (P=1.4x10(-5)). Although we observe an association with increased BMI, waist-to-hip ratio adjusted for BMI is reduced, bioimpedance analyses indicate increased gluteofemoral fat, and abdominal MRI analyses indicate reduced visceral adiposity. Co-localization analyses strongly correlate increased CHRDL1 gene expression, particularly in adipose tissue, with reduced concentrations of blood lipids. The influence of X chromosome genetic variation on blood lipids and coronary heart disease (CHD) is not well understood. Here, the authors analyse X chromosome sequencing data across 65,322 multi-ancestry individuals, identifying associations of the Xq23 locus with lipid changes and reduced risk of CHD and diabetes mellitus.