Browsing by Subject "SPATIAL VARIATION"

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  • Strobbe, Floortje; Benard, Melanie; Rossen, Noortje G.; de Vos, Willem M.; Kumar, Nitin; Lawley, Trevor D.; Zoetendal, Erwin G.; Hugenholtz, Floor; Ponsioen, Cyriel Y. (2021)
    We evaluated a novel 'protected' biopsy method to reliably ascertain the spatial distribution of the mucosa-adherent colonic microbiota. Apart from minor differences at genus level, overall similarities along the colon were high between the various areas, irrespective of protected or unprotected sampling.
  • Gielen, Bert; Acosta, Manuel; Altimir, Nuria; Buchmann, Nina; Cescatte, Alessandro; Ceschia, Eric; Fleck, Stefan; Hortnagal, Lukas; Klumpp, Katja; Kolari, Pasi; Lohile, Annalea; Loustau, Denis; Maranon-Jimenez, Sara; Manisp, Languy; Matteucci, Giorgio; Merbold, Lutz; Metzger, Christine; Moureaux, Christine; Montagnani, Leonardo; Nilsson, Mats B.; Osborne, Bruce; Papale, Dario; Pavelka, Marian; Saunders, Matthew; Simioni, Guillaume; Soudani, Kamel; Sonnentag, Oliver; Tallec, Tiphaine; Tuittila, Eeva-Stiina; Peichl, Matthias; Pokorny, Radek; Vincke, Caroline; Wohljahrt, Georg (2018)
    The Integrated Carbon Observation System is a Pan-European distributed research infrastructure that has as its main goal to monitor the greenhouse gas balance of Europe. The ecosystem component of Integrated Carbon Observation System consists of a multitude of stations where the net greenhouse gas exchange is monitored continuously by eddy covariance measurements while, in addition many other measurements are carried out that are a key to an understanding of the greenhouse gas balance. Amongst them are the continuous meteorological measurements and a set of non-continuous measurements related to vegetation. The latter include Green Area Index, aboveground biomass and litter biomass. The standardized methodology that is used at the Integrated Carbon Observation System ecosystem stations to monitor these vegetation related variables differs between the ecosystem types that are represented within the network, whereby in this paper we focus on forests, grasslands, croplands and mires. For each of the variables and ecosystems a spatial and temporal sampling design was developed so that the variables can be monitored in a consistent way within the ICOS network. The standardisation of the methodology to collect Green Area Index, above ground biomass and litter biomass and the methods to evaluate the quality of the collected data ensures that all stations within the ICOS ecosystem network produce data sets with small and similar errors, which allows for inter-comparison comparisons across the Integrated Carbon Observation System ecosystem network.
  • Zhang, Hui; Valiranta, Minna; Piilo, Sanna; Amesbury, Matthew J.; Aquino-Lopez, Marco A.; Roland, Thomas P.; Salminen-Paatero, Susanna; Paatero, Jussi; Lohila, Annalea; Tuittila, Eeva-Stiina (2020)
    Northern boreal peatlands are important ecosystems in modulating global biogeochemical cycles, yet their biological communities and related carbon dynamics are highly sensitive to changes in climate. Despite this, the strength and recent direction of these feedbacks are still unclear. The response of boreal peatlands to climate warming has received relatively little attention compared with other northern peatland types, despite forming a large northern hemisphere-wide ecosystem. Here, we studied the response of two ombrotrophic boreal peatlands to climate variability over the last c. 200 years for which local meteorological data are available. We used remains from plants and testate amoebae to study historical changes in peatland biological communities. These data were supplemented by peat property (bulk density, carbon and nitrogen content), C-14, Pb-210 and Cs-137 analyses and were used to infer changes in peatland hydrology and carbon dynamics. In total, six peat cores, three per study site, were studied that represent different microhabitats: low hummock (LH), high lawn and low lawn. The data show a consistent drying trend over recent centuries, represented mainly as a change from wet habitat Sphagnum spp. to dry habitat S. fuscum. Summer temperature and precipitation appeared to be important drivers shaping peatland community and surface moisture conditions. Data from the driest microhabitat studied, LH, revealed a clear and strong negative linear correlation (R-2 = .5031; p <.001) between carbon accumulation rate and peat surface moisture conditions: under dry conditions, less carbon was accumulated. This suggests that at the dry end of the moisture gradient, availability of water regulates carbon accumulation. It can be further linked to the decreased abundance of mixotrophic testate amoebae under drier conditions (R-2 = .4207; p <.001). Our study implies that if effective precipitation decreases in the future, the carbon uptake capacity of boreal bogs may be threatened.
  • Tiusanen, Mikko; Huotari, Tea; Hebert, Paul D. N.; Andersson, Tommi; Asmus, Ashley; Bety, Joel; Davis, Emma; Gale, Jennifer; Hardwick, Bess; Hik, David; Körner, Christian; Lanctot, Richard B.; Loonen, Maarten J. J. E.; Partanen, Rauni; Reischke, Karissa; Saalfeld, Sarah T.; Senez-Gagnon, Fanny; Smith, Paul A.; Sulavik, Jan; Syvanpera, Ilkka; Urbanowicz, Christine; Williams, Sian; Woodard, Paul; Zaika, Yulia; Roslin, Tomas (2019)
    Pollination is an ecosystem function of global importance. Yet, who visits the flower of specific plants, how the composition of these visitors varies in space and time and how such variation translates into pollination services are hard to establish. The use of DNA barcodes allows us to address ecological patterns involving thousands of taxa that are difficult to identify. To clarify the regional variation in the visitor community of a widespread flower resource, we compared the composition of the arthropod community visiting species in the genus Dryas (mountain avens, family Rosaceae), throughout Arctic and high-alpine areas. At each of 15 sites, we sampled Dryas visitors with 100 sticky flower mimics and identified specimens to Barcode Index Numbers (BINs) using a partial sequence of the mitochondrial COI gene. As a measure of ecosystem functioning, we quantified variation in the seed set of Dryas. To test for an association between phylogenetic and functional diversity, we characterized the structure of local visitor communities with both taxonomic and phylogenetic descriptors. In total, we detected 1,360 different BINs, dominated by Diptera and Hymenoptera. The richness of visitors at each site appeared to be driven by local temperature and precipitation. Phylogeographic structure seemed reflective of geological history and mirrored trans-Arctic patterns detected in plants. Seed set success varied widely among sites, with little variation attributable to pollinator species richness. This pattern suggests idiosyncratic associations, with function dominated by few and potentially different taxa at each site. Taken together, our findings illustrate the role of post-glacial history in the assembly of flower-visitor communities in the Arctic and offer insights for understanding how diversity translates into ecosystem functioning.
  • Wachiye, Sheila Aswani; Merbold, Lutz; Vesala, Timo; Rinne, Janne; Leitner, Sonja; Räsänen, Matti; Vuorinne, Ilja; Heiskanen, Janne; Pellikka, Petri (2021)
    Sisal (Agave sisalana) is a climate-resilient crop grown on large-scale farms in semi-arid areas. However, no studies have investigated soil greenhouse gas (GHGs: CO2, N2O and CH4) fluxes from these plantations and how they relate to other land cover types. We examined GHG fluxes (Fs) in a sisal chronosequence at Teita Sisal Estate in southern Kenya. The effects of stand age on Fs were examined using static GHG chambers and gas chromatography for a period of one year in seven stands: young stands aged 1-3 years, mature stands aged 7-8 years, and old stands aged 13-14 years. Adjacent bushland served as a control site representing the surrounding land use type. Mean CO2 fluxes were highest in the oldest stand (56 +/- 3 mg C m(-2) h(-1)) and lowest in the 8-year old stand (38 +/- 3 mg C m(-2) h(-1)), which we attribute to difference in root respiration between the stand. All stands had 13-28% higher CO2 fluxes than bushland (32 +/- 3 mg C m(-2) h(-1)). CO2 fluxes in the wet season were about 70% higher than dry season across all sites. They were influenced by soil water content (W-S) and vegetation phenology. Mean N2O fluxes were very low (
  • Karvonen, Anssi; Lindström, Kai (2018)
    Parasitism is considered a major selective force in natural host populations. Infections can decrease host condition and vigour, and potentially influence, for example, host population dynamics and behavior such as mate choice. We studied parasite infections of two common marine fish species, the sand goby (Pomatoschistus minutus) and the common goby (Pomatoschistus microps), in the brackish water Northern Baltic Sea. We were particularly interested in the occurrence of parasite taxa located in central sensory organs, such as eyes, potentially affecting fish behavior and mate choice. We found that both fish species harbored parasite communities dominated by taxa transmitted to fish through aquatic invertebrates. Infections also showed significant spatiotemporal variation. Trematodes in the eyes were very few in some locations, but infection levels were higher among females than males, suggesting differences in exposure or resistance between the sexes. To test between these hypotheses, we experimentally exposed male and female sand gobies to infection with the eye fluke Diplostomum pseudospathaceum. These trials showed that the fish became readily infected and females had higher parasite numbers, supporting higher susceptibility of females. Eye fluke infections also caused high cataract intensities among the fish in the wild. Our results demonstrate the potential of these parasites to influence host condition and visual abilities, which may have significant implications for survival and mate choice in goby populations.
  • de Jesus, Alma Lorelei; Rahman, Md Mahmudur; Mazaheri, Mandana; Thompson, Helen; Knibbs, Luke D.; Jeong, Cheol; Evans, Greg; Nei, Wei; Ding, Aijun; Qiao, Liping; Li, Li; Portin, Harri; Niemi, Jarkko V.; Timonen, Hilkka; Luoma, Krista; Petäjä, Tuukka; Kulmala, Markku; Kowalski, Michal; Peters, Annette; Cyrys, Josef; Ferrero, Luca; Manigrasso, Maurizio; Avino, Pasquale; Buonano, Giorgio; Reche, Cristina; Querol, Xavier; Beddows, David; Harrison, Roy M.; Sowlat, Mohammad H.; Sioutas, Constantinos; Morawska, Lidia (2019)
    Can mitigating only particle mass, as the existing air quality measures do, ultimately lead to reduction in ultrafine particles (UFP)? The aim of this study was to provide a broader urban perspective on the relationship between UFP, measured in terms of particle number concentration (PNC) and PM2.5 (mass concentration of particles with aerodynamic diameter <2.5 mu m) and factors that influence their concentrations. Hourly average PNC and PM2.5 were acquired from 10 cities located in North America, Europe, Asia, and Australia over a 12-month period. A pairwise comparison of the mean difference and the Kolmogorov-Smirnov test with the application of bootstrapping were performed for each city. Diurnal and seasonal trends were obtained using a generalized additive model (GAM). The particle number to mass concentration ratios and the Pearson's correlation coefficient were calculated to elucidate the nature of the relationship between these two metrics. Results show that the annual mean concentrations ranged from 8.0 x 10 3 to 19.5 x 10(3) and from 7.0 to 65.8 mu g.m(-3) for PNC and PM2.5, respectively, with the data distributions generally skewed to the right, and with a wider spread for PNC. PNC showed a more distinct diurnal trend compared with PM2.5, attributed to the high contributions of UFP from vehicular emissions to PNC. The variation in both PNC and PM2.5 due to seasonality is linked to the cities' geographical location and features. Clustering the cities based on annual median concentrations of both PNC and PM2.5 demonstrated that a high PNC level does not lead to a high PM2.5, and vice versa. The particle number-to-mass ratio (in units of 10(9) g(-1)) ranged from 0.14 to 2.2, > 1 for roadside sites and <1 for urban background sites with lower values for more polluted cities. The Pearson's r ranged from 0.09 to 0.64 for the log-transformed data, indicating generally poor linear correlation between PNC and PM2.5. Therefore, PNC and PM2.5 measurements are not representative of each other; and regulating PM2.5 does little to reduce PNC. This highlights the need to establish regulatory approaches and control measures to address the impacts of elevated UFP concentrations, especially in urban areas, considering their potential health risks.
  • Penczykowski, Rachel M.; Laine, Anna-Liisa; Koskella, Britt (2016)
    Predicting the emergence, spread and evolution of parasites within and among host populations requires insight to both the spatial and temporal scales of adaptation, including an understanding of within-host up through community-level dynamics. Although there are very few pathosystems for which such extensive data exist, there has been a recent push to integrate studies performed over multiple scales or to simultaneously test for dynamics occurring across scales. Drawing on examples from the literature, with primary emphasis on three diverse host-parasite case studies, we first examine current understanding of the spatial structure of host and parasite populations, including patterns of local adaptation and spatial variation in host resistance and parasite infectivity. We then explore the ways to measure temporal variation and dynamics in host-parasite interactions and discuss the need to examine change over both ecological and evolutionary timescales. Finally, we highlight new approaches and syntheses that allow for simultaneous analysis of dynamics across scales. We argue that there is great value in examining interplay among scales in studies of host-parasite interactions.
  • Karvonen, Anssi; Kristjansson, Bjarni K.; Skulason, Skuli; Lanki, Maiju; Rellstab, Christian; Jokela, Jukka (2013)