Microscopy Image Browser : A Platform for Segmentation and Analysis of Multidimensional Datasets

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dc.contributor University of Helsinki, Institute of Biotechnology en
dc.contributor University of Helsinki, Institute of Biotechnology en
dc.contributor University of Helsinki, Institute of Biotechnology en
dc.contributor University of Helsinki, Institute of Biotechnology en
dc.contributor University of Helsinki, Institute of Biotechnology en
dc.contributor.author Belevich, Ilya
dc.contributor.author Joensuu, Merja
dc.contributor.author Kumar, Darshan
dc.contributor.author Vihinen, Helena
dc.contributor.author Jokitalo, Eija
dc.date.accessioned 2016-05-12T15:12:02Z
dc.date.available 2016-05-12T15:12:02Z
dc.date.issued 2016-01
dc.identifier.citation Belevich , I , Joensuu , M , Kumar , D , Vihinen , H & Jokitalo , E 2016 , ' Microscopy Image Browser : A Platform for Segmentation and Analysis of Multidimensional Datasets ' , PLoS Biology , vol. 14 , no. 1 , 1002340 . https://doi.org/10.1371/journal.pbio.1002340 en
dc.identifier.issn 1545-7885
dc.identifier.other PURE: 62901702
dc.identifier.other PURE UUID: 2acee3d8-5fe7-4b68-8872-814d2d06037c
dc.identifier.other WOS: 000371882900009
dc.identifier.other Scopus: 84961335080
dc.identifier.other ORCID: /0000-0003-3862-9237/work/30328082
dc.identifier.other ORCID: /0000-0002-4159-6934/work/30366535
dc.identifier.other ORCID: /0000-0003-2190-4909/work/67131514
dc.identifier.uri http://hdl.handle.net/10138/161956
dc.description.abstract Understanding the structure-function relationship of cells and organelles in their natural context requires multidimensional imaging. As techniques for multimodal 3-D imaging have become more accessible, effective processing, visualization, and analysis of large datasets are posing a bottleneck for the workflow. Here, we present a new software package for high-performance segmentation and image processing of multidimensional datasets that improves and facilitates the full utilization and quantitative analysis of acquired data, which is freely available from a dedicated website. The open-source environment enables modification and insertion of new plug-ins to customize the program for specific needs. We provide practical examples of program features used for processing, segmentation and analysis of light and electron microscopy datasets, and detailed tutorials to enable users to rapidly and thoroughly learn how to use the program. en
dc.format.extent 13
dc.language.iso eng
dc.relation.ispartof PLoS Biology
dc.rights en
dc.subject 3D VISUALIZATION en
dc.subject CELLS en
dc.subject BIOLOGY en
dc.subject MOUSE en
dc.subject DEAD en
dc.subject 1182 Biochemistry, cell and molecular biology en
dc.title Microscopy Image Browser : A Platform for Segmentation and Analysis of Multidimensional Datasets en
dc.type Article
dc.description.version Peer reviewed
dc.identifier.doi https://doi.org/10.1371/journal.pbio.1002340
dc.type.uri info:eu-repo/semantics/other
dc.type.uri info:eu-repo/semantics/publishedVersion
dc.contributor.pbl
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dc.contributor.pbl

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