Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni

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http://hdl.handle.net/10138/163032

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Baig , A , McNally , A , Dunn , S , Paszkiewicz , K H , Corander , J & Manning , G 2015 , ' Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni ' , BMC Genomics , vol. 16 , 852 . https://doi.org/10.1186/s12864-015-2087-y

Title: Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni
Author: Baig, Abiyad; McNally, Alan; Dunn, Steven; Paszkiewicz, Konrad H.; Corander, Jukka; Manning, Georgina
Other contributor: University of Helsinki, Department of Mathematics and Statistics


Date: 2015-10-24
Language: eng
Number of pages: 12
Belongs to series: BMC Genomics
ISSN: 1471-2164
DOI: https://doi.org/10.1186/s12864-015-2087-y
URI: http://hdl.handle.net/10138/163032
Abstract: Background: Campylobacter jejuni is a major zoonotic pathogen, causing gastroenteritis in humans. Invasion is an important pathogenesis trait by which C. jejuni causes disease. Here we report the genomic analysis of 134 strains to identify traits unique to hyperinvasive isolates. Methods: A total of 134 C. jejuni genomes were used to create a phylogenetic tree to position the hyperinvasive strains. Comparative genomics lead to the identification of mosaic capsule regions. A pan genome approach led to the discovery of unique loci, or loci with unique alleles, to the hyperinvasive strains. Results: Phylogenetic analysis showed that the hyper-invasive phenotype is a generalist trait. Despite the fact that hyperinvasive strains are only distantly related based on the whole genome phylogeny, they all possess genes within the capsule region with high identity to capsule genes from C. jejuni subsp. doylei and C. lari. In addition there were genes unique to the hyper-invasive strains with identity to non-C. jejuni genes, as well as allelic variants of mainly pathogenesis related genes already known in the other C. jejuni. In particular, the sequence of flagella genes, flgD-E and flgL were highly conserved amongst the hyper-invasive strains and divergent from sequences in other C. jejuni. A novel cytolethal distending toxin (cdt) operon was also identified as present in all hyper-invasive strains in addition to the classic cdt operon present in other C. jejuni. Conclusions: Overall, the hyper-invasive phenotype is strongly linked to the presence of orthologous genes from other Campylobacter species in their genomes, notably within the capsule region, in addition to the observed association with unique allelic variants in flagellar genes and the secondary cdt operon which is unlikely under random sharing of accessory alleles in separate lineages.
Subject: DISTENDING TOXIN
CAPSULAR POLYSACCHARIDE
HUMAN INFECTION
HEP-2 CELLS
IDENTIFICATION
COLONIZATION
VIRULENCE
REVEALS
STRAINS
GENOMES
112 Statistics and probability
3111 Biomedicine
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