C14orf132 gene is possibly related to extremely low birth weight

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Tiirats , A , Viltrop , T , Noukas , M , Reimann , E , Salumets , A & Koks , S 2016 , ' C14orf132 gene is possibly related to extremely low birth weight ' , BMC Genetics , vol. 17 , 132 . https://doi.org/10.1186/s12863-016-0439-5

Title: C14orf132 gene is possibly related to extremely low birth weight
Author: Tiirats, Airi; Viltrop, Triin; Noukas, Margit; Reimann, Ene; Salumets, Andres; Koks, Sulev
Contributor organization: Clinicum
Department of Obstetrics and Gynecology
HUS Gynecology and Obstetrics
Date: 2016-09-22
Language: eng
Number of pages: 5
Belongs to series: BMC Genetics
ISSN: 1471-2156
DOI: https://doi.org/10.1186/s12863-016-0439-5
URI: http://hdl.handle.net/10138/167847
Abstract: Background: Despite extensive research the genetic component of extremely low birth weight (ELBW) in newborns has remained obscure. Results: The aim of the case study was to identify candidate gene(s) causing ELBW in newborns and hypotrophy in infants. A family of four was studied: mother, father and two ELBW-phenotype children. Studies were made of the medical conditions of the second child at birth and post-partum - peculiar phenotype, micro-anomalies, recurrent infections, suspicion of autoimmune hepatitis, multifactorial encephalopathy and suspected metabolic and chromosomal abnormalities. Whole genome single nucleotide polymorphism (SNP) genotyping array was used to investigate the genomic rearrangements in both affected children using peripheral blood DNA samples. Whole blood transcriptome was assessed by using RNA sequencing (RNA-seq) in all four family members. RNA-seq identified a single gene - C14orf132 (chromosome 14 open reading frame 132) differentially expressed, with the level of the transcript significantly lower in the blood samples of the children. Copy number variant (CNV) analysis did not reveal any pathogenic CNVs in the region of C14orf132 gene of both affected children. Conclusion: We demonstrated the importance of combining whole genome CNV and transcriptome analysis in identification of the candidate gene(s) in case studies. We propose the C14orf132 gene expression to be associated with the ELBW-phenotype. C14orf132 gene is a novel long non-coding RNA (lincRNA) with unknown function, which might be associated with the pre- and early postnatal developmental delay through the altered gene expression.
Subject: Copy number variants
Extremely low birth weight
RNA-seq and long non-coding RNA
3123 Gynaecology and paediatrics
Peer reviewed: Yes
Rights: cc_by
Usage restriction: openAccess
Self-archived version: publishedVersion

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