A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies

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http://hdl.handle.net/10138/205968

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Massart , S , Candresse , T , Gil , J , Lacomme , C , Predajna , L , Ravnikar , M , Reynard , J-S , Rumbou , A , Saldarelli , P , Skoric , D , Vainio , E J , Valkonen , J P T , Vanderschuren , H , Varveri , C & Wetzel , T 2017 , ' A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies ' , Frontiers in Microbiology , vol. 8 , 45 . https://doi.org/10.3389/fmicb.2017.00045

Title: A Framework for the Evaluation of Biosecurity, Commercial, Regulatory, and Scientific Impacts of Plant Viruses and Viroids Identified by NGS Technologies
Author: Massart, Sebastien; Candresse, Thierry; Gil, Jose; Lacomme, Christophe; Predajna, Lukas; Ravnikar, Maja; Reynard, Jean-Sebastien; Rumbou, Artemis; Saldarelli, Pasquale; Skoric, Dijana; Vainio, Eeva J.; Valkonen, Jari P. T.; Vanderschuren, Herve; Varveri, Christina; Wetzel, Thierry
Contributor: University of Helsinki, Department of Agricultural Sciences
Date: 2017-01-24
Language: eng
Number of pages: 7
Belongs to series: Frontiers in Microbiology
ISSN: 1664-302X
URI: http://hdl.handle.net/10138/205968
Abstract: Recent advances in high-throughput sequencing technologies and bioinformatics have generated huge new opportunities for discovering and diagnosing plant viruses and viroids. Plant virology has undoubtedly benefited from these new methodologies, but at the same time, faces now substantial bottlenecks, namely the biological characterization of the newly discovered viruses and the analysis of their impact at the biosecurity, commercial, regulatory, and scientific levels. This paper proposes a scaled and progressive scientific framework for efficient biological characterization and risk assessment when a previously known or a new plant virus is detected by next generation sequencing (NGS) technologies. Four case studies are also presented to illustrate the need for such a framework, and to discuss the scenarios.
Subject: NGS
pest risk analysis
virus diseases
biological characterization
plant health
regulatory agencies
MIXED INFECTIONS
PINOT-GRIS
GRAPEVINE
DIAGNOSTICS
WIDESPREAD
SEPARATION
QUARANTINE
DISEASE
1183 Plant biology, microbiology, virology
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