Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1

Show full item record



Massinen , S , Wang , J , Laivuori , K , Bieder , A , Paez , I T , Jiao , H & Kere , J 2016 , ' Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1 ' , Journal of neurodevelopmental disorders , vol. 8 , 4 .

Title: Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1
Author: Massinen, Satu; Wang, Jingwen; Laivuori, Krista; Bieder, Andrea; Paez, Isabel Tapia; Jiao, Hong; Kere, Juha
Contributor organization: Research Programs Unit
Juha Kere / Principal Investigator
Research Programme of Molecular Medicine
Research Programme for Molecular Neurology
Date: 2016-01-27
Language: eng
Number of pages: 12
Belongs to series: Journal of neurodevelopmental disorders
ISSN: 1866-1947
Abstract: Background: The DYX5 locus for developmental dyslexia was mapped to chromosome 3 by linkage study of a large Finnish family, and later, roundabout guidance receptor 1 (ROBO1) was implicated as a candidate gene at DYX5 with suppressed expression from the segregating rare haplotype. A functional magnetoencephalographic study of several family members revealed abnormal auditory processing of interaural interaction, supporting a defect in midline crossing of auditory pathways. In the current study, we have characterized genetic variation in the broad ROBO1 gene region in the DYX5-linked family, aiming to identify variants that would increase our understanding of the altered expression of ROBO1. Methods: We have used a whole genome sequencing strategy on a pooled sample of 19 individuals in combination with two individually sequenced genomes. The discovered genetic variants were annotated and filtered. Subsequently, the most interesting variants were functionally tested using relevant methods, including electrophoretic mobility shift assay (EMSA), luciferase assay, and gene knockdown by lentiviral small hairpin RNA (shRNA) in lymphoblasts. Results: We found one novel intronic single nucleotide variant (SNV) and three novel intergenic SNVs in the broad region of ROBO1 that were specific to the dyslexia susceptibility haplotype. Functional testing by EMSA did not support the binding of transcription factors to three of the SNVs, but one of the SNVs was bound by the LIM homeobox 2 (LHX2) protein, with increased binding affinity for the non-reference allele. Knockdown of LHX2 in lymphoblast cell lines extracted from subjects from the DYX5-linked family showed decreasing expression of ROBO1, supporting the idea that LHX2 regulates ROBO1 also in human. Conclusions: The discovered variants may explain the segregation of dyslexia in this family, but the effect appears subtle in the experimental settings. Their impact on the developing human brain remains suggestive based on the association and subtle experimental support.
Subject: Dyslexia
Whole genome sequencing
3112 Neurosciences
Peer reviewed: Yes
Rights: cc_by
Usage restriction: openAccess
Self-archived version: publishedVersion

Files in this item

Total number of downloads: Loading...

Files Size Format View
s11689_016_9136_y.pdf 1.401Mb PDF View/Open

This item appears in the following Collection(s)

Show full item record