Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
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Niemi , O , Laine , P , Koskinen , P , Pasanen , M , Pennanen , V , Harjunpaa , H , Nykyri , J , Holm , L , Paulin , L , Auvinen , P , Palva , E T & Pirhonen , M 2017 , ' Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1 ' , Standards in Genomic Sciences , vol. 12 , 87 . https://doi.org/10.1186/s40793-017-0301-z
| Title: | Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1 |
| Author: | Niemi, Outi; Laine, Pia; Koskinen, Patrik; Pasanen, Miia; Pennanen, Ville; Harjunpaa, Heidi; Nykyri, Johanna; Holm, Liisa; Paulin, Lars; Auvinen, Petri; Palva, E. Tapio; Pirhonen, Minna |
| Contributor organization: | Biosciences Institute of Biotechnology Department of Agricultural Sciences Tapio Palva Research Group Kasvipatologia, Valkonen Jari (-2009) Computational genomics Genetics Bioinformatics DNA Sequencing and Genomics Viikki Plant Science Centre (ViPS) Minna Pirhonen / Principal Investigator Plant Production Sciences |
| Date: | 2017-12-20 |
| Language: | eng |
| Number of pages: | 8 |
| Belongs to series: | Standards in Genomic Sciences |
| ISSN: | 1944-3277 |
| DOI: | https://doi.org/10.1186/s40793-017-0301-z |
| URI: | http://hdl.handle.net/10138/231263 |
| Abstract: | Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980's. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes. |
| Subject: |
Pectobacterium
Soft rot Plant pathogen Necrotroph Potato Finland ERWINIA-CAROTOVORA SUBSP CAROTOVORA RNA GENES TOOL SECRETION ENTEROBACTERIACEAE ARABIDOPSIS VIRULENCE WASABIAE PROPOSAL 1183 Plant biology, microbiology, virology |
| Peer reviewed: | Yes |
| Rights: | cc_by |
| Usage restriction: | openAccess |
| Self-archived version: | publishedVersion |
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