Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1

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Niemi , O , Laine , P , Koskinen , P , Pasanen , M , Pennanen , V , Harjunpaa , H , Nykyri , J , Holm , L , Paulin , L , Auvinen , P , Palva , E T & Pirhonen , M 2017 , ' Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1 ' , Standards in Genomic Sciences , vol. 12 , 87 . https://doi.org/10.1186/s40793-017-0301-z

Title: Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1
Author: Niemi, Outi; Laine, Pia; Koskinen, Patrik; Pasanen, Miia; Pennanen, Ville; Harjunpaa, Heidi; Nykyri, Johanna; Holm, Liisa; Paulin, Lars; Auvinen, Petri; Palva, E. Tapio; Pirhonen, Minna
Contributor: University of Helsinki, Biosciences
University of Helsinki, Institute of Biotechnology
University of Helsinki, Biosciences
University of Helsinki, Department of Agricultural Sciences
University of Helsinki, Tapio Palva Research Group
University of Helsinki, Biosciences
University of Helsinki, Kasvipatologia, Valkonen Jari (-2009)
University of Helsinki, Biosciences
University of Helsinki, Institute of Biotechnology
University of Helsinki, Institute of Biotechnology
University of Helsinki, Viikki Plant Science Centre (ViPS)
University of Helsinki, Department of Agricultural Sciences
Date: 2017-12-20
Language: eng
Number of pages: 8
Belongs to series: Standards in Genomic Sciences
ISSN: 1944-3277
URI: http://hdl.handle.net/10138/231263
Abstract: Bacteria of the genus Pectobacterium are economically important plant pathogens that cause soft rot disease on a wide variety of plant species. Here, we report the genome sequence of Pectobacterium carotovorum strain SCC1, a Finnish soft rot model strain isolated from a diseased potato tuber in the early 1980's. The genome of strain SCC1 consists of one circular chromosome of 4,974,798 bp and one circular plasmid of 5524 bp. In total 4451 genes were predicted, of which 4349 are protein coding and 102 are RNA genes.
Subject: Pectobacterium
Soft rot
Plant pathogen
Necrotroph
Potato
Finland
ERWINIA-CAROTOVORA
SUBSP CAROTOVORA
RNA GENES
TOOL
SECRETION
ENTEROBACTERIACEAE
ARABIDOPSIS
VIRULENCE
WASABIAE
PROPOSAL
1183 Plant biology, microbiology, virology
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