Marwah , V S , Kinare , P A S , Serra , A , Scala , G , Lauerma , A , Fortino , V & Grecot , D 2018 , ' INfORM : Inference of NetwOrk Response Modules ' , Bioinformatics , vol. 34 , no. 12 , pp. 2136-2138 . https://doi.org/10.1093/bioinformatics/bty063
Title: | INfORM : Inference of NetwOrk Response Modules |
Author: | Marwah, Veer Singh; Kinare, Pia Anneli Sofia; Serra, Angela; Scala, Giovanni; Lauerma, Antti; Fortino, Vittorio; Grecot, Dario |
Contributor organization: | Institute of Biotechnology Clinicum Department of Dermatology, Allergology and Venereology HUS Inflammation Center |
Date: | 2018-06-15 |
Language: | eng |
Number of pages: | 3 |
Belongs to series: | Bioinformatics |
ISSN: | 1367-4803 |
DOI: | https://doi.org/10.1093/bioinformatics/bty063 |
URI: | http://hdl.handle.net/10138/237078 |
Abstract: | The Summary: Detecting and interpreting responsive modules from gene expression data by using network-based approaches is a common but laborious task. It often requires the application of several computational methods implemented in different software packages, forcing biologists to compile complex analytical pipelines. Here we introduce INfORM (Inference of NetwOrk Response Modules), an R shiny application that enables non-expert users to detect, evaluate and select gene modules with high statistical and biological significance. INfORM is a comprehensive tool for the identification of biologically meaningful response modules from consensus gene networks inferred by using multiple algorithms. It is accessible through an intuitive graphical user interface allowing for a level of abstraction from the computational steps. |
Subject: |
R PACKAGE
1182 Biochemistry, cell and molecular biology 3111 Biomedicine |
Peer reviewed: | Yes |
Rights: | cc_by_nc |
Usage restriction: | openAccess |
Self-archived version: | publishedVersion |
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