Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua

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http://hdl.handle.net/10138/305142

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Veltsos , P , Ridout , K E , Toups , M A , Gonzalez-Martinez , S C , Muyle , A , Emery , O , Rastas , P , Hudzieczek , V , Hobza , R , Vyskot , B , Marais , G A B , Filatov , D A & Pannell , J R 2019 , ' Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua ' , Genetics , vol. 212 , no. 3 , pp. 815-835 . https://doi.org/10.1534/genetics.119.302045

Title: Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua
Author: Veltsos, Paris; Ridout, Kate E.; Toups, Melissa A.; Gonzalez-Martinez, Santiago C.; Muyle, Aline; Emery, Olivier; Rastas, Pasi; Hudzieczek, Vojtech; Hobza, Roman; Vyskot, Boris; Marais, Gabriel A. B.; Filatov, Dmitry A.; Pannell, John R.
Contributor: University of Helsinki, Institute of Biotechnology
Date: 2019-07
Language: eng
Number of pages: 21
Belongs to series: Genetics
ISSN: 0016-6731
URI: http://hdl.handle.net/10138/305142
Abstract: Suppressed recombination allows divergence between homologous sex chromosomes and the functionality of their genes. Here, we reveal patterns of the earliest stages of sex-chromosome evolution in the diploid dioecious herb Mercurialis annua on the basis of cytological analysis, de novo genome assembly and annotation, genetic mapping, exome resequencing of natural populations, and transcriptome analysis. The genome assembly contained 34,105 expressed genes, of which 10,076 were assigned to linkage groups. Genetic mapping and exome resequencing of individuals across the species range both identified the largest linkage group, LG1, as the sex chromosome. Although the sex chromosomes of M. annua are karyotypically homomorphic, we estimate that about one-third of the Y chromosome, containing 568 transcripts and spanning 22.3 cM in the corresponding female map, has ceased recombining. Nevertheless, we found limited evidence for Y-chromosome degeneration in terms of gene loss and pseudogenization, and most X- and Y-linked genes appear to have diverged in the period subsequent to speciation between M. annua and its sister species M. huetii, which shares the same sex-determining region. Taken together, our results suggest that the M. annua Y chromosome has at least two evolutionary strata: a small old stratum shared with M. huetii, and a more recent larger stratum that is probably unique to M. annua and that stopped recombining similar to 1 MYA. Patterns of gene expression within the nonrecombining region are consistent with the idea that sexually antagonistic selection may have played a role in favoring suppressed recombination.
Subject: sex chromosomes
whole genome sequencing
sex linkage
evolutionary strata
gene expression
BIASED GENE-EXPRESSION
X-CHROMOSOME
SILENE-LATIFOLIA
Y-CHROMOSOME
PHYLOGENETIC ANALYSIS
DOSAGE COMPENSATION
MOLECULAR EVIDENCE
READ ALIGNMENT
DRAFT GENOME
SEQUENCE
3111 Biomedicine
1184 Genetics, developmental biology, physiology
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