Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

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http://hdl.handle.net/10138/320937

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Smillie , C S , Biton , M , Ordovas-Montanes , J , Sullivan , K M , Burgin , G , Graham , D B , Herbst , R H , Rogel , N , Slyper , M , Waldman , J , Sud , M , Andrews , E , Velonias , G , Haber , A L , Jagadeesh , K , Vickovic , S , Yao , J , Stevens , C , Dionne , D , Nguyen , L T , Villani , A-C , Hofree , M , Creasey , E A , Huang , H , Rozenblatt-Rosen , O , Garber , J J , Khalili , H , Desch , A N , Daly , M J , Ananthakrishnan , A N , Shalek , A K , Xavier , R J & Regev , A 2019 , ' Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis ' , Cell , vol. 178 , no. 3 , pp. 714-+ . https://doi.org/10.1016/j.cell.2019.06.029

Title: Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis
Author: Smillie, Christopher S.; Biton, Moshe; Ordovas-Montanes, Jose; Sullivan, Ken M.; Burgin, Grace; Graham, Daniel B.; Herbst, Rebecca H.; Rogel, Noga; Slyper, Michel; Waldman, Julia; Sud, Malika; Andrews, Elizabeth; Velonias, Gabriella; Haber, Adam L.; Jagadeesh, Karthik; Vickovic, Sanja; Yao, Junmei; Stevens, Christine; Dionne, Danielle; Nguyen, Lan T.; Villani, Alexandra-Chloe; Hofree, Matan; Creasey, Elizabeth A.; Huang, Hailiang; Rozenblatt-Rosen, Orit; Garber, John J.; Khalili, Hamed; Desch, A. Nicole; Daly, Mark J.; Ananthakrishnan, Ashwin N.; Shalek, Alex K.; Xavier, Ramnik J.; Regev, Aviv
Other contributor: University of Helsinki, Institute for Molecular Medicine Finland

Date: 2019-07-25
Language: eng
Number of pages: 39
Belongs to series: Cell
ISSN: 0092-8674
DOI: https://doi.org/10.1016/j.cell.2019.06.029
URI: http://hdl.handle.net/10138/320937
Abstract: Genome-wide association studies (GWAS) have revealed risk alleles for ulcerative colitis (UC). To understand their cell type specificities and pathways of action, we generate an atlas of 366,650 cells from the colon mucosa of 18 UC patients and 12 healthy individuals, revealing 51 epithelial, stromal, and immune cell subsets, including BEST4(+) enterocytes, microfold-like cells, and IL13RA2(+)IL11(+) inflammatory fibroblasts, which we associate with resistance to anti-TNF treatment. Inflammatory fibroblasts, inflammatory monocytes, microfold-like cells, and T cells that co-express CD8 and IL-17 expand with disease, forming intercellular interaction hubs. Many UC risk genes are cell type specific and coregulated within relatively few gene modules, suggesting convergence onto limited sets of cell types and pathways. Using this observation, we nominate and infer functions for specific risk genes across GWAS loci. Our work provides a framework for interrogating complex human diseases and mapping risk variants to cell types and pathways.
Subject: INFLAMMATORY-BOWEL-DISEASE
GENE-EXPRESSION
RNA-SEQ
DENDRITIC CELLS
T-CELLS
DATABASE
LOCI
DIFFERENTIATION
ASSOCIATION
ANTIBODIES
1182 Biochemistry, cell and molecular biology
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