GTO : A toolkit to unify pipelines in genomic and proteomic research

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Almeida , J R , Pinho , A J , Oliveira , J L , Fajarda , O & Pratas , D 2020 , ' GTO : A toolkit to unify pipelines in genomic and proteomic research ' , SoftwareX , vol. 12 , 100535 . https://doi.org/10.1016/j.softx.2020.100535

Title: GTO : A toolkit to unify pipelines in genomic and proteomic research
Author: Almeida, Joao R.; Pinho, Armando J.; Oliveira, Jose L.; Fajarda, Olga; Pratas, Diogo
Other contributor: University of Helsinki, Department of Virology

Date: 2020
Language: eng
Number of pages: 6
Belongs to series: SoftwareX
ISSN: 2352-7110
DOI: https://doi.org/10.1016/j.softx.2020.100535
URI: http://hdl.handle.net/10138/324968
Abstract: Next-generation sequencing triggered the production of a massive volume of publicly available data and the development of new specialised tools. These tools are dispersed over different frameworks, making the management and analyses of the data a challenging task. Additionally, new targeted tools are needed, given the dynamics and specificities of the field. We present GTO, a comprehensive toolkit designed to unify pipelines in genomic and proteomic research, which combines specialised tools for analysis, simulation, compression, development, visualisation, and transformation of the data. This toolkit combines novel tools with a modular architecture, being an excellent platform for experimental scientists, as well as a useful resource for teaching bioinformatics enquiry to students in life sciences. GTO is implemented in C language and is available, under the MIT license, at https://bioinformatics.ua.pt/gto. (C) 2020 The Authors. Published by Elsevier B.V.
Subject: Genomic Toolkit
Proteomic Toolkit
Next-generation sequencing
COMPRESSION
SOFTWARE
SEQUENCE
11832 Microbiology and virology
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