Savarese , M , Välipakka , S , Johari , M , Hackman , P & Udd , B 2020 , ' Is Gene-Size an Issue for the Diagnosis of Skeletal Muscle Disorders? ' , Journal of Neuromuscular Diseases , vol. 7 , no. 3 , pp. 203-216 . https://doi.org/10.3233/JND-190459
Title: | Is Gene-Size an Issue for the Diagnosis of Skeletal Muscle Disorders? |
Author: | Savarese, Marco; Välipakka, Salla; Johari, Mridul; Hackman, Peter; Udd, Bjarne |
Contributor organization: | Department of Medical and Clinical Genetics Biosciences Medicum |
Date: | 2020 |
Language: | eng |
Number of pages: | 14 |
Belongs to series: | Journal of Neuromuscular Diseases |
ISSN: | 2214-3599 |
DOI: | https://doi.org/10.3233/JND-190459 |
URI: | http://hdl.handle.net/10138/327455 |
Abstract: | Human genes have a variable length. Those having a coding sequence of extraordinary length and a high number of exons were almost impossible to sequence using the traditional Sanger-based gene-by-gene approach. High-throughput sequencing has partly overcome the size-related technical issues, enabling a straightforward, rapid and relatively inexpensive analysis of large genes. Several large genes (e.g. TTN, NEB, RYR1, DMD) are recognized as disease-causing in patients with skeletal muscle diseases. However, because of their sheer size, the clinical interpretation of variants in these genes is probably the most challenging aspect of the high-throughput genetic investigation in the field of skeletal muscle diseases. The main aim of this review is to discuss the technical and interpretative issues related to the diagnostic investigation of large genes and to reflect upon the current state of the art and the future advancements in the field. © 2020 - IOS Press and the authors. All rights reserved. |
Subject: |
copy number variants (CNV)
genetic diagnosis Large genes variant interpretation variants of uncertain significance (VUS) connectin nebulin RNA binding protein ryanodine receptor 1 alternative RNA splicing biological model computer model copy number variation deep learning DMD gene gene gene size genetic variability human induced pluripotent stem cell missense mutation myopathy NEB gene nonhuman pathophysiology priority journal Review RNA sequencing RYR1 gene single nucleotide polymorphism TTN gene 1184 Genetics, developmental biology, physiology |
Peer reviewed: | Yes |
Rights: | cc_by_nc |
Usage restriction: | openAccess |
Self-archived version: | publishedVersion |
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