Comparison of convolutional neural network training strategies for cone-beam CT image segmentation

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http://hdl.handle.net/10138/333787

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Minnema , J , Wolff , J , Koivisto , J , Lucka , F , Batenburg , K J , Forouzanfar , T & van Eijnatten , M 2021 , ' Comparison of convolutional neural network training strategies for cone-beam CT image segmentation ' , Computer Methods and Programs in Biomedicine , vol. 207 , 106192 . https://doi.org/10.1016/j.cmpb.2021.106192

Title: Comparison of convolutional neural network training strategies for cone-beam CT image segmentation
Author: Minnema, Jordi; Wolff, Jan; Koivisto, Juha; Lucka, Felix; Batenburg, Kees Joost; Forouzanfar, Tymour; van Eijnatten, Maureen
Contributor organization: Department of Physics
Date: 2021-08
Language: eng
Number of pages: 10
Belongs to series: Computer Methods and Programs in Biomedicine
ISSN: 0169-2607
DOI: https://doi.org/10.1016/j.cmpb.2021.106192
URI: http://hdl.handle.net/10138/333787
Abstract: Background and objective: Over the past decade, convolutional neural networks (CNNs) have revolutionized the field of medical image segmentation. Prompted by the developments in computational resources and the availability of large datasets, a wide variety of different two-dimensional (2D) and threedimensional (3D) CNN training strategies have been proposed. However, a systematic comparison of the impact of these strategies on the image segmentation performance is still lacking. Therefore, this study aimed to compare eight different CNN training strategies, namely 2D (axial, sagittal and coronal slices), 2.5D (3 and 5 adjacent slices), majority voting, randomly oriented 2D cross-sections and 3D patches. Methods: These eight strategies were used to train a U-Net and an MS-D network for the segmentation of simulated cone-beam computed tomography (CBCT) images comprising randomly-placed non-overlapping cylinders and experimental CBCT images of anthropomorphic phantom heads. The resulting segmentation performances were quantitatively compared by calculating Dice similarity coefficients. In addition, all segmented and gold standard experimental CBCT images were converted into virtual 3D models and compared using orientation-based surface comparisons. Results: The CNN training strategy that generally resulted in the best performances on both simulated and experimental CBCT images was majority voting. When employing 2D training strategies, the segmentation performance can be optimized by training on image slices that are perpendicular to the predominant orientation of the anatomical structure of interest. Such spatial features should be taken into account when choosing or developing novel CNN training strategies for medical image segmentation. Conclusions: The results of this study will help clinicians and engineers to choose the most-suited CNN training strategy for CBCT image segmentation. (c) 2021 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY license ( http://creativecommons.org/licenses/by/4.0/ )
Subject: 113 Computer and information sciences
3126 Surgery, anesthesiology, intensive care, radiology
Medical image segmentation
Deep learning
Convolutional neural networks
Training strategies
Cone-beam computed tomography
DEEP
PLATFORM
CNN
Peer reviewed: Yes
Rights: cc_by
Usage restriction: openAccess
Self-archived version: publishedVersion


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