dc.contributor.author |
Vainio, Tuomas J V |
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dc.contributor.author |
Mäkelä, Teemu Olavi |
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dc.contributor.author |
Savolainen, Sauli |
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dc.contributor.author |
Kangasniemi, Marko Matti |
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dc.date.accessioned |
2021-09-29T05:38:03Z |
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dc.date.available |
2021-09-29T05:38:03Z |
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dc.date.issued |
2021-09-24 |
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dc.identifier.citation |
Vainio , T J V , Mäkelä , T O , Savolainen , S & Kangasniemi , M M 2021 , ' Performance of a 3D convolutional neural network in the detection of hypoperfusion at CT pulmonary angiography in patients with chronic pulmonary embolism : a feasibility study ' , European radiology experimental , vol. 5 , no. 1 , 45 . https://doi.org/10.1186/s41747-021-00235-z |
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dc.identifier.other |
PURE: 168818307 |
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dc.identifier.other |
PURE UUID: 20e48d65-f6ff-48fb-b945-3af119a61859 |
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dc.identifier.other |
ORCID: /0000-0001-8085-322X/work/100759299 |
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dc.identifier.other |
WOS: 000698670400001 |
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dc.identifier.uri |
http://hdl.handle.net/10138/334685 |
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dc.description.abstract |
Background Chronic pulmonary embolism (CPE) is a life-threatening disease easily misdiagnosed on computed tomography. We investigated a three-dimensional convolutional neural network (CNN) algorithm for detecting hypoperfusion in CPE from computed tomography pulmonary angiography (CTPA). Methods Preoperative CTPA of 25 patients with CPE and 25 without pulmonary embolism were selected. We applied a 48%-12%-40% training-validation-testing split (12 positive and 12 negative CTPA volumes for training, 3 positives and 3 negatives for validation, 10 positives and 10 negatives for testing). The median number of axial images per CTPA was 335 (min-max, 111-570). Expert manual segmentations were used as training and testing targets. The CNN output was compared to a method in which a Hounsfield unit (HU) threshold was used to detect hypoperfusion. Receiver operating characteristic area under the curve (AUC) and Matthew correlation coefficient (MCC) were calculated with their 95% confidence interval (CI). Results The predicted segmentations of CNN showed AUC 0.87 (95% CI 0.82-0.91), those of HU-threshold method 0.79 (95% CI 0.74-0.84). The optimal global threshold values were CNN output probability >= 0.37 and |
en |
dc.format.extent |
12 |
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dc.language.iso |
eng |
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dc.relation.ispartof |
European radiology experimental |
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dc.rights |
cc_by |
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dc.rights.uri |
info:eu-repo/semantics/openAccess |
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dc.subject |
ATTENUATION |
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dc.subject |
COMPUTED-TOMOGRAPHY |
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dc.subject |
Computed tomography angiography |
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dc.subject |
DIAGNOSIS |
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dc.subject |
DISEASE |
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dc.subject |
Deep learning |
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dc.subject |
Feasibility Studies |
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dc.subject |
HYPERTENSION |
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dc.subject |
Neural networks (computer) |
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dc.subject |
PERFUSION |
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dc.subject |
PLATFORM |
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dc.subject |
Pulmonary embolism |
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dc.subject |
THROMBOEMBOLISM |
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dc.subject |
114 Physical sciences |
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dc.title |
Performance of a 3D convolutional neural network in the detection of hypoperfusion at CT pulmonary angiography in patients with chronic pulmonary embolism : a feasibility study |
en |
dc.type |
Article |
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dc.contributor.organization |
Doctoral Programme in Clinical Research |
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dc.contributor.organization |
HUS Medical Imaging Center |
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dc.contributor.organization |
Doctoral Programme in Materials Research and Nanosciences |
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dc.contributor.organization |
Department of Diagnostics and Therapeutics |
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dc.contributor.organization |
Department of Physics |
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dc.contributor.organization |
Helsinki In Vivo Animal Imaging Platform (HAIP) |
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dc.contributor.organization |
University Management |
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dc.contributor.organization |
Sauli Savolainen / Principal Investigator |
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dc.contributor.organization |
Clinicum |
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dc.description.reviewstatus |
Peer reviewed |
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dc.relation.doi |
https://doi.org/10.1186/s41747-021-00235-z |
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dc.relation.issn |
2509-9280 |
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dc.rights.accesslevel |
openAccess |
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dc.type.version |
publishedVersion |
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