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T1  - Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era 
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UR  - URN:ISBN:978-951-51-3231-4; http://hdl.handle.net/10138/185901 
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A1  - Valenzuela, Daniel 
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PB  - Helsingin yliopisto 
Y1  - 2017 
LA  - en 
AB  - This thesis is motivated by two important processes in bioinformatics, namely variation calling and haplotyping. The contributions range from basic algorithms for sequence analysis, to the implementation of pipelines to deal with real data.

Variation calling characterizes an individual's genome by identifying how it differs from a reference genome. It uses reads -- small DNA fragments -- extracted from a biological sample, and aligns them to the reference to identify the genetic variants presen... 
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